PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01611.1.g00170.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 263aa    MW: 28207.8 Da    PI: 7.6722
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01611.1.g00170.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.31.5e-12111151445
                                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
                 Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                     W ++E+ ll+++++++G g+W+ +a+++g +++  qc++++ 
  Zpz_sc01611.1.g00170.1.sm.mkhc 111 WNADEEILLLEGIEMYGLGNWAEVAEHVG-TKSKTQCIEHYT 151
                                     *****************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002911.6E-104792IPR000433Zinc finger, ZZ-type
PfamPF005691.1E-94990IPR000433Zinc finger, ZZ-type
SuperFamilySSF578502.94E-1451114No hitNo description
PROSITE profilePS5013510.8245194IPR000433Zinc finger, ZZ-type
CDDcd023352.17E-255199No hitNo description
PROSITE patternPS0135705380IPR000433Zinc finger, ZZ-type
SuperFamilySSF466895.76E-13106157IPR009057Homeodomain-like
PROSITE profilePS5129322.432106158IPR017884SANT domain
SMARTSM007173.1E-11107156IPR001005SANT/Myb domain
PfamPF002491.8E-12110151IPR001005SANT/Myb domain
CDDcd001672.73E-13111152No hitNo description
Gene3DG3DSA:1.10.10.603.8E-9111153IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009631Biological Processcold acclimation
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGRSRGVQNS GDDDTGHRSK RRRVASSGDA SDSLSAVCGG AGEGGGKKAL YHCNYCNKDI  60
SGKIRIKCSK CPDFDLCVEC FSVGAEVTPH RSNHPYRVMD NLAFHLICPD WNADEEILLL  120
EGIEMYGLGN WAEVAEHVGT KSKTQCIEHY TTAYMNSPCY PLPDMSQISG KNRKELLAMA  180
KVQGDSKKGT SLLPGDLASK AESSFSPSRV KLEDALGEGP AARSPSHIAG GANKKASNVG  240
HLKDGANVSK VEGMSFCWMP YTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw3_E2e-37511665120Transcriptional adapter 2
6cw3_G2e-37511665120Transcriptional adapter 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11923KRRRV
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01611.1.g00170.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149065.11e-162transcriptional adapter ADA2
SwissprotQ75LL61e-151TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A3B6MXP91e-161A0A3B6MXP9_WHEAT; Transcriptional adapter
TrEMBLA0A446TF191e-162A0A446TF19_TRITD; Transcriptional adapter
TrEMBLA0A453LU281e-161A0A453LU28_AEGTS; Transcriptional adapter
TrEMBLR7VYP11e-161R7VYP1_AEGTA; Transcriptional adapter
STRINGEMT006941e-162(Aegilops tauschii)
STRINGTraes_5DL_2054A21EE.11e-162(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77083847
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]