PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01608.1.g00130.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 406aa MW: 43952 Da PI: 8.3328

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01608.1.g00130.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.3	7.4e-05	203	221	2	20
HHHHHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsaf 20 r +h++ E+rRR++iN+++ Zpz_sc01608.1.g00130.1.sm.mkhc 203 RSKHSATEQRRRSKINDRL 221 889**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.3E-4	200	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.11E-6	201	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.03E-5	203	234	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.8E-5	222	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MGLQGDKATH DFLSLYSAAK DSALPLIPGS KKTPPSQGFF LKTHDFLQPL ERPSSPSQQP 60 AAEKPVDARH ALPGGVGTFS INRPTADLPG SVKQEPAAFA LWGQPEPRGH PWALPFAAAR 120 CVAVAPARPQ QQQQMPLDRK AGGGFTEAGS RSSGSGGFDD DDDHAACREV SSSVKELTVR 180 VEETKGGSCS GSAGTDKLPN TPRSKHSATE QRRRSKINDR LVIEYIRFLQ EKVQKYEVSH 240 HEWNQENAKV APWSNIYFRS FWKNAQNKDE MNGDTAPDPS QVIKNGSSLP FPFAVKPADG 300 NNAAPFEIAS AGHELAEANQ KGCVSYKEAD TASNIPNNVA SQQAAHLMKS LPTEVHRVNS 360 EMLKDPELAI DEGTISLSSQ YSQGNSPVKQ LMAKRFGTNR SRGMGL

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MGLQGDKATH DFLSLYSAAK DSALPLIPGS KKTPPSQGFF LKTHDFLQPL ERPSSPSQQP  60
AAEKPVDARH ALPGGVGTFS INRPTADLPG SVKQEPAAFA LWGQPEPRGH PWALPFAAAR  120
CVAVAPARPQ QQQQMPLDRK AGGGFTEAGS RSSGSGGFDD DDDHAACREV SSSVKELTVR  180
VEETKGGSCS GSAGTDKLPN TPRSKHSATE QRRRSKINDR LVIEYIRFLQ EKVQKYEVSH  240
HEWNQENAKV APWSNIYFRS FWKNAQNKDE MNGDTAPDPS QVIKNGSSLP FPFAVKPADG  300
NNAAPFEIAS AGHELAEANQ KGCVSYKEAD TASNIPNNVA SQQAAHLMKS LPTEVHRVNS  360
EMLKDPELAI DEGTISLSSQ YSQGNSPVKQ LMAKRFGTNR SRGMGL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01608.1.g00130.1.sm.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822754.1	1e-168	transcription factor BIM1-like isoform X1
TrEMBL	A0A2T7D8Q5	1e-175	A0A2T7D8Q5_9POAL; Uncharacterized protein
STRING	Si013622m	1e-157	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP762	37	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.3	9e-18	bHLH family protein