PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01568.1.g00050.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 205aa    MW: 22223.8 Da    PI: 4.7849
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01568.1.g00050.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.3e-16858155
                           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                  ++ykGVr +k +g+Wv+eIr p++   r r++lg+++ +e+Aa+a +aa   l+g
  Zpz_sc01568.1.g00050.1.sm.mk  8 KKYKGVRLRK-WGKWVSEIRLPNS---RERIWLGSYDAPEKAARAFDAAFVFLRG 58
                                  59******99.**********933...5********************9877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.30E-24871No hitNo description
SMARTSM003802.0E-27975IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-26971IPR001471AP2/ERF domain
PROSITE profilePS5103221.298969IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-18971IPR016177DNA-binding domain
PfamPF008478.2E-9952IPR001471AP2/ERF domain
PRINTSPR003672.1E-81021IPR001471AP2/ERF domain
PRINTSPR003672.1E-83248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MDGGRESKKY KGVRLRKWGK WVSEIRLPNS RERIWLGSYD APEKAARAFD AAFVFLRGRD  60
AAGTDLNFPD SPPPCRASCS IDPQEVQAAA LSHANRAAVS TGEAAATFMD VDDSPLELLS  120
REALTHGTGF LDAGSGIEVV APVRADGSID WRPVMAHPPP LFSPVGWGSN AYDFLQVPPA  180
AAADEDMEES IHGASTSLWS FDMRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-12469972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01568.1.g00050.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794487.11e-97ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC23e-34ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A3G2LN091e-122A0A3G2LN09_9POAL; ERF transcription factor
STRINGPavir.J00593.1.p2e-96(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-36ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]