PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01559.1.g00180.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 313aa    MW: 34606.1 Da    PI: 6.0495
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01559.1.g00180.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.31.1e-072632962154
                                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                     k +yp+++++++L +++gL+ +q+ +WF N+R +
  Zpz_sc01559.1.g00180.1.sm.mkhc 263 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 296
                                     469*****************************87 PP
2ELK24.18.3e-09217238122
                             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                     ELK +L++++++++ ++++E++
  Zpz_sc01559.1.g00180.1.sm.mkhc 217 ELKIELKQGFKSKIEDVREEIL 238
                                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.8E-165195IPR005540KNOX1
PfamPF037907.5E-155393IPR005540KNOX1
SMARTSM012561.7E-23106161IPR005541KNOX2
PfamPF037914.2E-18109160IPR005541KNOX2
PROSITE profilePS512139.045217237IPR005539ELK domain
PROSITE profilePS5007111.726237300IPR001356Homeobox domain
SuperFamilySSF466894.15E-16239303IPR009057Homeodomain-like
SMARTSM003891.8E-10239304IPR001356Homeobox domain
CDDcd000862.61E-12240301No hitNo description
Gene3DG3DSA:1.10.10.602.8E-25244303IPR009057Homeodomain-like
PfamPF059201.2E-17257296IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MQSGGDQGGS LAMDMGVGFT GGSGGAECSS SSATVAAAAA AAAAAEAEER QLIKGEIAVH  60
PLCEQLVAAH VGCLRVATPI DHLPLIDAQL SQSSGLLHSY AAHHRPFLSP HDKHDLDSFL  120
AQYLMLLCSF REQLQQHVRV HAVEAVMACR EIEQSLQDLT GATLEEGTGA TMSEDEDEPP  180
IMEGTMDMGS EAHDMMGFGP LLPTDSERSL MERVRQELKI ELKQGFKSKI EDVREEILRK  240
RRAGKLPGDT TSILKQWWQQ HAKWPYPTED DKAKLVEETG LQLKQINNWF INQRKRNWHN  300
NSQTSTLKSK RKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293312RKRNWHNNSQTSTLKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01559.1.g00180.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9669070.0EU966907.1 Zea mays clone 298091 homeobox protein HD1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468611.20.0homeobox protein knotted-1-like 3
SwissprotQ94LW30.0KNOS3_ORYSJ; Homeobox protein knotted-1-like 3
TrEMBLA0A1B6QQV90.0A0A1B6QQV9_SORBI; Uncharacterized protein
STRINGGRMZM2G159431_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-138KNOTTED-like homeobox of Arabidopsis thaliana 7