PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01559.1.g00110.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | TALE | ||||||||
Protein Properties | Length: 489aa MW: 52804.4 Da PI: 7.7415 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.6 | 4.8e-09 | 231 | 268 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + Zpz_sc01559.1.g00110.1.am.mk 231 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 268 664459******************************88 PP | |||||||
2 | BELL | 71.5 | 1.5e-23 | 108 | 162 | 18 | 72 |
BELL 18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +d+rY++y+eq++ v++ Feavag +a Yt+lA+++iSrhFr+L+d i+ q+ Zpz_sc01559.1.g00110.1.am.mk 108 LLDRRYRRYCEQMRSVAGGFEAVAGERAASAYTALASRTISRHFRNLRDGIVAQL 162 579*************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.3E-6 | 31 | 160 | IPR006563 | POX domain |
Pfam | PF07526 | 1.2E-20 | 105 | 158 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.195 | 209 | 272 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.6E-9 | 212 | 276 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.54E-12 | 212 | 273 | No hit | No description |
SuperFamily | SSF46689 | 1.63E-17 | 213 | 279 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.5E-28 | 215 | 278 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 6.1E-18 | 229 | 268 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence Send to blast |
MVAGRVHLRQ GQGRVPFPGP RPSLLETSIP LPFFRYLLSL HEACWPGPLP SRPAFQFPVS 60 AQQRHDTGSA SLLLFFSACC STASPLRMPI PCHSILSASA HTTQFLLLLD RRYRRYCEQM 120 RSVAGGFEAV AGERAASAYT ALASRTISRH FRNLRDGIVA QLQAARKALG EKDVGVRGMT 180 CGETPRLRVL DQCIRQQKAL NLQAGMMESQ PWRPQRGLPE RAVTILRAWL FEHFLHPYPS 240 DVDKHILARQ TGLSRSQVSN WFINARVRLW KPMVEEMYVE EMKGEQQHDD GGGSSGGGHV 300 NPNPSISEAS ELAYNVGRQH GVSETADGGS NNGIDRKPTR EQLLHDAGSL AAVVSVGSGV 360 ACAGPGGGAR LVESFGVMDH LDFDAYDDDG HHQAAGGFGS VSLTLGLQQH SGSRGESGGV 420 NIAFGAPPSS AHHGGYLFAA PGHQHMEGGD HHQYVQLGAA MDGGEAPQGQ EHYRNLSAAG 480 FHLLRDLAG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5bng_A | 3e-17 | 218 | 276 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 3e-17 | 218 | 276 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01559.1.g00110.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU957962 | 1e-176 | EU957962.1 Zea mays clone 1638491 BEL1-related homeotic protein 14 mRNA, complete cds. | |||
GenBank | EU957980 | 1e-176 | EU957980.1 Zea mays clone 1639087 BEL1-related homeotic protein 14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985907.1 | 1e-159 | homeobox protein BEL1 homolog | ||||
Refseq | XP_012698473.1 | 1e-159 | homeobox protein BEL1 homolog | ||||
Refseq | XP_012698474.1 | 1e-159 | homeobox protein BEL1 homolog | ||||
TrEMBL | A0A1E5UVC1 | 1e-163 | A0A1E5UVC1_9POAL; Homeobox protein BEL1-like protein | ||||
STRING | Si034720m | 1e-158 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3814 | 37 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 9e-76 | TALE family protein |