PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01555.1.g00060.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB

Protein Properties

Length: 977aa MW: 107240 Da PI: 10.1001

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01555.1.g00060.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.9	1.8e-16	532	579	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv + +++G+g+W++++++ g+ R+ k+c++rw +yl Zpz_sc01555.1.g00060.1.am.mk 532 KGPWTPEEDLVLVSYLHEHGPGNWRAVPARTGLMRCSKSCRLRWTNYL 579 79********************************************97 PP
2	Myb_DNA-binding	48.1	2.7e-15	585	630	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++l+v++ ++lG++ W++Ia++++ Rt++++k++w+++l Zpz_sc01555.1.g00060.1.am.mk 585 RGNFTDQEEKLIVHLQALLGNR-WAAIASYLP-ERTDNDIKNFWNTHL 630 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.6E-23	523	582	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.696	527	583	IPR017930	Myb domain
SuperFamily	SSF46689	6.36E-28	529	626	IPR009057	Homeodomain-like
SMART	SM00717	4.2E-13	531	581	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-15	532	579	IPR001005	SANT/Myb domain
CDD	cd00167	9.52E-11	534	579	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.4E-23	583	634	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.067	584	634	IPR017930	Myb domain
SMART	SM00717	6.8E-16	584	632	IPR001005	SANT/Myb domain
Pfam	PF00249	4.7E-14	585	630	IPR001005	SANT/Myb domain
CDD	cd00167	7.14E-11	587	630	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 977 aa Download sequence Send to blast
MSLLPDVSTH WYTWNSCAVP SAARLHSTFA LNPVPSAIAS RTLRSEYVAV SDGTIPAPAR 60 TEVRLCRALI PSADAKLLVT KSPDALNFGA FLLVLATWLS TARQYATVPV PPRTGPGPWH 120 GDAPMPYAAA HCGSRRRRRL STLQGALEQC GRAHEREYPA EHCNECVCRI NAFAMALGSC 180 RAAALWRVRL GETGDVSTWS PESSSDYPRR ETPRSAGRDG FRATLRIFGL DRTIPRKHDL 240 SIHIPVPASA ILLLYSCPVG RGHCVDFRLV ITPLRLCFDF YVVRCRCRCR TMHAHSTDTA 300 LSLSRCTGKI TSAPGPGNLS VDYPAPLFWP LPPRVVIHGL NLIASGQGEW KPGAFATRHM 360 RPGHASAAIE CHGRGVVPRH GIAPPHSTMD ESASVGVFFA SNDREGRKLL QRPQLLDADG 420 NRRAFVRLTS VRRSRSSSKV SAVVWPRPET GVSVYKRANN SRVATLNRGH HDSHSSERKL 480 LFSQLWLITH QFHAHFQSRA CRAKTQQKGS LLDRPPSTMG RPPCCDKEGV KKGPWTPEED 540 LVLVSYLHEH GPGNWRAVPA RTGLMRCSKS CRLRWTNYLR PGIKRGNFTD QEEKLIVHLQ 600 ALLGNRWAAI ASYLPERTDN DIKNFWNTHL KRKLQSTGGD AAAKPTAHRP LASSKWQWER 660 RLQTDINMAR RALREALTPL DDVVKTPQPD AAGAETGGDV DSSASCSSGA SQWFPSTASA 720 PYVLTTENIS RMLDCWSASG KGRRGGSGKG TPGGEESASG SSDASEVSYG GAVAPDTGHL 780 FEYETKPAEP AQQTQLSAIE SWLFEDDSNF HHVQSASLLD AAMDYPHRIP TSRHFPRSPK 840 QSRNRSDRRS YFILPSKDAQ TSPSLIPDLL LTETESPAAM DMSVIAERLG LCDVTFESSV 900 LGIVSACLPP PPQAPPVHFR SFAHIRVDAS LISALCRARC ARPSSASRSR RPNPAKPRRQ 960 AKLNFKKPGI EVPSAAN

Sequence ? help Back to Top

Protein Sequence Length: 977 aa Download sequence Send to blast

MSLLPDVSTH WYTWNSCAVP SAARLHSTFA LNPVPSAIAS RTLRSEYVAV SDGTIPAPAR  60
TEVRLCRALI PSADAKLLVT KSPDALNFGA FLLVLATWLS TARQYATVPV PPRTGPGPWH  120
GDAPMPYAAA HCGSRRRRRL STLQGALEQC GRAHEREYPA EHCNECVCRI NAFAMALGSC  180
RAAALWRVRL GETGDVSTWS PESSSDYPRR ETPRSAGRDG FRATLRIFGL DRTIPRKHDL  240
SIHIPVPASA ILLLYSCPVG RGHCVDFRLV ITPLRLCFDF YVVRCRCRCR TMHAHSTDTA  300
LSLSRCTGKI TSAPGPGNLS VDYPAPLFWP LPPRVVIHGL NLIASGQGEW KPGAFATRHM  360
RPGHASAAIE CHGRGVVPRH GIAPPHSTMD ESASVGVFFA SNDREGRKLL QRPQLLDADG  420
NRRAFVRLTS VRRSRSSSKV SAVVWPRPET GVSVYKRANN SRVATLNRGH HDSHSSERKL  480
LFSQLWLITH QFHAHFQSRA CRAKTQQKGS LLDRPPSTMG RPPCCDKEGV KKGPWTPEED  540
LVLVSYLHEH GPGNWRAVPA RTGLMRCSKS CRLRWTNYLR PGIKRGNFTD QEEKLIVHLQ  600
ALLGNRWAAI ASYLPERTDN DIKNFWNTHL KRKLQSTGGD AAAKPTAHRP LASSKWQWER  660
RLQTDINMAR RALREALTPL DDVVKTPQPD AAGAETGGDV DSSASCSSGA SQWFPSTASA  720
PYVLTTENIS RMLDCWSASG KGRRGGSGKG TPGGEESASG SSDASEVSYG GAVAPDTGHL  780
FEYETKPAEP AQQTQLSAIE SWLFEDDSNF HHVQSASLLD AAMDYPHRIP TSRHFPRSPK  840
QSRNRSDRRS YFILPSKDAQ TSPSLIPDLL LTETESPAAM DMSVIAERLG LCDVTFESSV  900
LGIVSACLPP PPQAPPVHFR SFAHIRVDAS LISALCRARC ARPSSASRSR RPNPAKPRRQ  960
AKLNFKKPGI EVPSAAN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-24	532	636	7	110	B-MYB
1gv2_A	2e-24	532	634	4	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	3e-24	532	634	58	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	3e-24	532	634	58	159	MYB PROTO-ONCOGENE PROTEIN
1mse_C	1e-24	532	634	4	105	C-Myb DNA-Binding Domain
1msf_C	1e-24	532	634	4	105	C-Myb DNA-Binding Domain

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01555.1.g00060.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT042611	0.0	BT042611.1 Zea mays full-length cDNA clone ZM_BFb0368F24 mRNA, complete cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP229	38	296

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	3e-82	myb domain protein 94