PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01528.1.g00040.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 1053aa    MW: 115133 Da    PI: 6.6676
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01528.1.g00040.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP92.25.2e-29178236159
                                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS- CS
                             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeek 59 
                                     +Cqv++C+adl++ak+yhrrhkvCe+hsk++++lv++++qrfCqqCsrfh l efDe+ 
  Zpz_sc01528.1.g00040.1.sm.mkhc 178 MCQVDDCRADLTSAKDYHRRHKVCEIHSKTTKALVANQMQRFCQQCSRFHPLAEFDEGT 236
                                     6*******************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.8E-31172236IPR004333Transcription factor, SBP-box
PROSITE profilePS5114122.589176253IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-27177237IPR004333Transcription factor, SBP-box
PfamPF031103.7E-22179236IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1053 aa     Download sequence    Send to blast
MQREVGPQVA PPLFLHQIQQ LPPHAAAAKK RGHPWPAGPP ANKPAVVADA GAGAGNWNPR  60
MWDWDSRSLT ARPSSDALRL GSGAGQSQPQ PAARAAEASR QGSGALNLQL GLRKDGATAM  120
DTTGSAPMAA ASSPPPSAAA GQEPVVRPSK RVRSGSPGSV AGGSVGGGAA NGGGSYPMCQ  180
VDDCRADLTS AKDYHRRHKV CEIHSKTTKA LVANQMQRFC QQCSRFHPLA EFDEGTNNAG  240
KVPSIPPIPD KQNLVEIISK INSLNNTNSA TESPPSEVVD LNASNGPQQD SVQKMTNETE  300
KPTVPSTKDL LGVLSTALAT SAPEQSQGSS DSSDNNKSKS HSTEPANVVN SHAKSMGAFP  360
GNNAYESQPH MYKETDQETR PYLSLQLFGS VDDDIRPKTD SANKYLSSES SNPLDERSPS  420
SSPPITRKFF PIHSVDEVVR HPQAADYGED PAMIEVSTSR AWCAPPLELF KDSERPIENG  480
SPPNPGYRSC YASTSCSDHS PSSSNSDGQD RTGRIIFKLF GKEPSTIPGN LRSEIINWLK  540
HSPTEMEGYI RPGCLVLSMY LSMPPIAWDE LEENLLQRVN ALIEGSGVDF WRNGRFLVRT  600
DTQLVSYKDG MTRLSKSWRT WNTPELTFVT PIAVVGGKKS FLVLKGRNLT IPGTQIHCTN  660
MGKYISKQVL CSAYPGTIYD DSGVETFDLP GEPNLTLGRC FIEVENRFRG NSFPVIVANS  720
SVCKELRNLE IELEDSQFHD VSLDDQVHDH RQSKPRDQAL HFLNELGWLF QRAAACTPST  780
RSDVCDSDLI QFSTIRFKHL LLFSSERDWC SVTRTLLDIL AKRSFVSEEV SQETLEMLSE  840
IHLLNRAVKR KSSCMVHLLV QYVVMCPDNS KLYPFVPNLP GPGGLTPLHL AASIENAEDI  900
VDALTDDPQQ IGLSCWQSVL DDDGQSPETY AKLRNHNSYN ELVAQKLLDR KNNQVTIMVS  960
KDDILVEQLG NDGDYNKSGA QALQIRSCSQ CAILDSGVLR PPLRSRGLLA RPYIHSMLAI  1020
AAVCVCVCVF MRALLRFNSG RSFKWERLDF GTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A8e-26174233160squamosa promoter-binding protein-like 12
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00664PBMTransfer from Potri.002G002400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01528.1.g00040.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021320166.10.0squamosa promoter-binding-like protein 15
SwissprotA2YX040.0SPL15_ORYSI; Squamosa promoter-binding-like protein 15
SwissprotQ6Z8M80.0SPL15_ORYSJ; Squamosa promoter-binding-like protein 15
TrEMBLA0A1B6PIZ00.0A0A1B6PIZ0_SORBI; Uncharacterized protein
STRINGSi013151m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54563853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14