PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01504.1.g00050.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 296aa MW: 31033.6 Da PI: 8.5557

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01504.1.g00050.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	118.5	3.8e-37	153	245	1	92
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i Zpz_sc01504.1.g00050.1.am.mk 153 PCGACKFLRRKCVSGCIFAPYFDHEQgAAHFAAVHKVFGASNVSKLLLQIPAHKRLDAVVTICYEAQARLRDPVYGCVAHI 233 7**********************989************************************************* PP DUF260 81 lklqqqleqlka 92 ++lqqq e+++a Zpz_sc01504.1.g00050.1.am.mk 234 FALQQQCEKKHA 245 *****99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.628	152	255	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.2E-37	153	245	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MWVRETTQEL GHWQHSSGCS LFHVYTYALP SSVLFYIAIP PGPPPFFLSG LSPLQSRLPS 60 ASIPACLPAC LSEPADAALV LSLQLERPRP ASGGGSEEEQ AVIRCSLRER GRPGHVPERA 120 MSSGGGGTST LGAGGGPSGS GGPGGGGGGG GGPCGACKFL RRKCVSGCIF APYFDHEQGA 180 AHFAAVHKVF GASNVSKLLL QIPAHKRLDA VVTICYEAQA RLRDPVYGCV AHIFALQQQC 240 EKKHASPLNL ESCCLPACLP HPAVNTMHVS SAAAPSIAAI RRLHPSRHAH ITRERT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-34	149	242	7	99	LOB family transfactor Ramosa2.1
5ly0_B	4e-34	149	242	7	99	LOB family transfactor Ramosa2.1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01504.1.g00050.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT061431	1e-116	BT061431.1 Zea mays full-length cDNA clone ZM_BFb0145J09 mRNA, complete cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3346	37	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45420.1	1e-47	LOB domain-containing protein 18