PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01503.1.g00080.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 280aa    MW: 29336 Da    PI: 7.3686
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01503.1.g00080.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94e-1758106148
                                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                                     rg+W++eEde l  +v+q+G+g +W + +++  ++R++k+c++rw++yl
  Zpz_sc01503.1.g00080.1.sm.mkhc  58 RGPWSPEEDEALRSYVQQHGSGgNWIALPKKARLKRCGKSCRLRWLNYL 106
                                     89*********************************************97 PP
2Myb_DNA-binding45.31.9e-14113155246
                                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                     g +T+eEd  +v + +qlG++ W++Ia+ +  gRt++++k++w++
  Zpz_sc01503.1.g00080.1.sm.mkhc 113 GGFTEEEDAVIVSLYAQLGSK-WSLIASQLE-GRTDNEVKNYWNT 155
                                     569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575130No hitNo description
PROSITE profilePS5129412.71853106IPR017930Myb domain
SuperFamilySSF466891.47E-2756153IPR009057Homeodomain-like
SMARTSM007174.7E-1257108IPR001005SANT/Myb domain
PfamPF002491.2E-1558106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2459113IPR009057Homeodomain-like
CDDcd001671.22E-960106No hitNo description
PROSITE profilePS5129422.297107161IPR017930Myb domain
SMARTSM007174.8E-12111159IPR001005SANT/Myb domain
PfamPF002492.4E-12113155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-23114161IPR009057Homeodomain-like
CDDcd001672.62E-10115157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MPPNERLVQV PPAPGTTASP LVLSNSASSC RAAPGWILGF GCLGGVPFGA HGTTAVKRGP  60
WSPEEDEALR SYVQQHGSGG NWIALPKKAR LKRCGKSCRL RWLNYLRPDI RHGGFTEEED  120
AVIVSLYAQL GSKWSLIASQ LEGRTDNEVK NYWNTKLKKR LAIAADAAAL SPAPPAATHS  180
PATALFPSIT IPTVKTETYT CDDFLAPAAF RGATSLGSGG GSTPASAASS ASNWSTDNDA  240
TAGDGFLLDF CAGNSDLGAA GQLELPGGYY YPLDPSLSLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23581617108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01503.1.g00080.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794161e-116HF679416.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB10 protein.
GenBankJF7566671e-116JF756667.1 Saccharum hybrid cultivar Co 740 MYB transcription factor MYB17 (MYB17) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968503.11e-103transcription factor RAX2
TrEMBLA0A3L6SQD01e-102A0A3L6SQD0_PANMI; Transcription factor RAX2-like
STRINGSi002629m1e-103(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.11e-56MYB family protein