PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01484.1.g00080.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 232aa MW: 25260.4 Da PI: 12.3284 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.8 | 2.1e-26 | 186 | 231 | 1 | 46 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 kr enk+ rqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++g+l Zpz_sc01484.1.g00080.1.am.mk 186 KRMENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRL 231 799*****************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.712 | 178 | 232 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.5E-31 | 178 | 232 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.27E-25 | 178 | 231 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.22E-34 | 179 | 232 | No hit | No description |
PRINTS | PR00404 | 5.3E-29 | 180 | 200 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.9E-23 | 187 | 232 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-29 | 200 | 215 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-29 | 215 | 232 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
LAKLCSCVCL RDGLPWTRNG LVVNSAPVLL ALADGTNVAG RQGGMVRGRS LSPARAAGRV 60 RSSAGLMTRA RRGARQLRAR RGETAVDTCP PSARPASPVG VASPPPRHCR ASLSSRARQG 120 VRPGFFHVHP RRHPRCLAGF VDTRREVGAA LQEEKAKKSG REGSRPGANL QLRLRRSMGR 180 GKVELKRMEN KISRQVTFAK RRNGLLKKAY ELSVLCDAEV ALIIFSTRGR LF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 3e-17 | 178 | 232 | 1 | 55 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 3e-17 | 178 | 232 | 1 | 55 | Myocyte-specific enhancer factor 2B |
1tqe_R | 3e-17 | 178 | 232 | 1 | 55 | Myocyte-specific enhancer factor 2B |
1tqe_S | 3e-17 | 178 | 232 | 1 | 55 | Myocyte-specific enhancer factor 2B |
6c9l_A | 3e-17 | 178 | 232 | 1 | 55 | Myocyte-specific enhancer factor 2B |
6c9l_B | 3e-17 | 178 | 232 | 1 | 55 | Myocyte-specific enhancer factor 2B |
6c9l_C | 3e-17 | 178 | 232 | 1 | 55 | Myocyte-specific enhancer factor 2B |
6c9l_D | 3e-17 | 178 | 232 | 1 | 55 | Myocyte-specific enhancer factor 2B |
6c9l_E | 3e-17 | 178 | 232 | 1 | 55 | Myocyte-specific enhancer factor 2B |
6c9l_F | 3e-17 | 178 | 232 | 1 | 55 | Myocyte-specific enhancer factor 2B |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01484.1.g00080.1.am.mk |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ512359 | 5e-75 | DQ512359.1 Triticum aestivum MADS-box transcription factor TaAGL8 (AGL8) mRNA, complete cds. | |||
GenBank | DQ512362 | 5e-75 | DQ512362.1 Triticum aestivum MADS-box transcription factor TaAGL5 (AGL5) mRNA, complete cds. | |||
GenBank | DQ534491 | 5e-75 | DQ534491.1 Triticum aestivum MADS3 mRNA, complete cds. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP42440 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03710.3 | 4e-29 | MIKC_MADS family protein |