PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01467.1.g00040.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 90aa    MW: 10487.2 Da    PI: 10.0252
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01467.1.g00040.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-171562148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g W++eEd++l d++ ++G g+W++++++ g+ R +k+c++rw +yl
  Zpz_sc01467.1.g00040.1.sm.mk 15 KGLWSPEEDQRLRDYILKHGLGCWSAVPAKAGLQRNGKSCRLRWINYL 62
                                  678*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-221065IPR009057Homeodomain-like
PROSITE profilePS5129422.7541066IPR017930Myb domain
SMARTSM007171.6E-111464IPR001005SANT/Myb domain
PfamPF002492.1E-151562IPR001005SANT/Myb domain
SuperFamilySSF466891.54E-211790IPR009057Homeodomain-like
CDDcd001676.86E-101862No hitNo description
Gene3DG3DSA:1.10.10.607.7E-86689IPR009057Homeodomain-like
PROSITE profilePS512947.1656790IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MGCRSCEKPK MNYRKGLWSP EEDQRLRDYI LKHGLGCWSA VPAKAGLQRN GKSCRLRWIN  60
YLRPGLKRGM FSQEEEDIVI DLQAKLGNKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-1399023101MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01467.1.g00040.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177025.19e-62transcription factor MYB6-like
SwissprotQ8LPH67e-37MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A453MV072e-60A0A453MV07_AEGTS; Uncharacterized protein
TrEMBLA0A453MV821e-60A0A453MV82_AEGTS; Uncharacterized protein
STRINGSb04g001110.14e-61(Sorghum bicolor)
STRINGTRIUR3_11495-P16e-61(Triticum urartu)
STRINGGRMZM2G088189_P015e-61(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170737109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.13e-39myb domain protein 86