PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01455.1.g00090.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 316aa    MW: 34615.6 Da    PI: 5.5853
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01455.1.g00090.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.5e-141875148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..........TTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..........kgRtlkqcksrwqkyl 48
                                  +g W++eEde+l++ +  +G g+W+++++  g          + R++k+c++rw +yl
  Zpz_sc01455.1.g00090.1.am.mk 18 KGLWSPEEDEKLYNHIISHGVGCWSSVPKLAGkfthtvlvsrLQRCGKSCRLRWINYL 75
                                  678*****************************************************97 PP
2Myb_DNA-binding47.63.8e-1581125147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg ++++E+ l+v +++ lG++ W+ Ia++++ gRt++++k++w++ 
  Zpz_sc01455.1.g00090.1.am.mk  81 RGGFSQQEEGLIVALHEILGNR-WSQIASHLP-GRTDNEIKNFWNSC 125
                                   7889******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.2161375IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.3E-211378IPR009057Homeodomain-like
SuperFamilySSF466891.65E-2515122IPR009057Homeodomain-like
SMARTSM007171.5E-101777IPR001005SANT/Myb domain
PfamPF002491.4E-121875IPR001005SANT/Myb domain
CDDcd001675.67E-102175No hitNo description
PROSITE profilePS5129423.74876130IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-2579130IPR009057Homeodomain-like
SMARTSM007177.0E-1480128IPR001005SANT/Myb domain
PfamPF002494.2E-1381125IPR001005SANT/Myb domain
CDDcd001673.66E-1084123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGRLSGGGGC GVQPKLRKGL WSPEEDEKLY NHIISHGVGC WSSVPKLAGK FTHTVLVSRL  60
QRCGKSCRLR WINYLRPDLK RGGFSQQEEG LIVALHEILG NRWSQIASHL PGRTDNEIKN  120
FWNSCLKKKL RQRGIDPSTH KPISGGADAA AALPEDQDRK PVAVDAGPAQ KQPAVFDPFP  180
ATDFGFDLAN VSAFYGQYDD AKASDDAVGF AVDYCSVLDV SVSENLGYGE SSSNSSNWNC  240
AEMSNVLDGD ALDWASGGGS CAKAEPFTEM ERRYHSGGWR VEVDDDALEL EHKFAALPGS  300
CHEQSLAHFD FNLEYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-261213021128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125131LKKKLRQ
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01455.1.g00090.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0391551e-116BT039155.1 Zea mays full-length cDNA clone ZM_BFb0377K22 mRNA, complete cds.
GenBankBT0635971e-116BT063597.1 Zea mays full-length cDNA clone ZM_BFc0084D02 mRNA, complete cds.
GenBankHQ8587221e-116HQ858722.1 Zea mays clone UT1189 MYB transcription factor mRNA, partial cds.
GenBankKJ7274941e-116KJ727494.1 Zea mays clone pUT5353 MYB transcription factor (MYB99) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961344.11e-145myb-related protein Hv33
SwissprotP200271e-105MYB3_HORVU; Myb-related protein Hv33
TrEMBLK3Z8601e-144K3Z860_SETIT; Uncharacterized protein
STRINGPavir.J19191.1.p1e-149(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.12e-71myb domain protein 86