PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01442.1.g00090.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 236aa    MW: 25004 Da    PI: 6.8987
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01442.1.g00090.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.4e-181462148
                                    TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                    rg+W++eEde l  +v+q+G+g +W + +++ g++R++k+c++rw++yl
  Zpz_sc01442.1.g00090.1.sm.mkhc 14 RGPWSPEEDEALRSYVQQHGSGgNWIALPKKAGLKRCGKSCRLRWLNYL 62
                                    89*********************************************97 PP

2Myb_DNA-binding45.71.5e-1469111246
                                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                     g +T+eEd  +v + +qlG++ W++Ia+ +  gRt++++k++w++
  Zpz_sc01442.1.g00090.1.sm.mkhc  69 GGFTEEEDAVIVSLYAQLGSK-WSLIASQLE-GRTDNEVKNYWNT 111
                                     569******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.865962IPR017930Myb domain
SuperFamilySSF466894.39E-2812109IPR009057Homeodomain-like
SMARTSM007171.0E-121364IPR001005SANT/Myb domain
PfamPF002491.6E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-251569IPR009057Homeodomain-like
CDDcd001672.16E-101662No hitNo description
PROSITE profilePS5129422.29763117IPR017930Myb domain
SMARTSM007174.8E-1267115IPR001005SANT/Myb domain
PfamPF002491.9E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2370117IPR009057Homeodomain-like
CDDcd001671.33E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGRTPCCDRT AVKRGPWSPE EDEALRSYVQ QHGSGGNWIA LPKKAGLKRC GKSCRLRWLN  60
YLRPDIRHGG FTEEEDAVIV SLYAQLGSKW SLIASQLEGR TDNEVKNYWN TKLKKRLAIA  120
ADAAALSPAP PAATHSPATA LFPSITIPTV KTETYTCDDF LAPAAFRGAT SLGSGGGSTP  180
ASAASSASNW STDNDATAGD GFLLDFCAGN SDLGAAGQLE LPGGYYHPLD PSLSLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01442.1.g00090.1.sm.mkhc
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794161e-130HF679416.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB10 protein.
GenBankJF7566671e-130JF756667.1 Saccharum hybrid cultivar Co 740 MYB transcription factor MYB17 (MYB17) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968503.11e-113transcription factor RAX2
SwissprotQ9SJL72e-65RAX2_ARATH; Transcription factor RAX2
TrEMBLA0A3L6SQD01e-112A0A3L6SQD0_PANMI; Transcription factor RAX2-like
STRINGSi002629m1e-112(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.11e-65MYB family protein
Publications ? help Back to Top
  1. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]