PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01437.1.g00130.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WOX

Protein Properties

Length: 273aa MW: 30958.4 Da PI: 6.0501

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01437.1.g00130.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.3	4e-21	91	151	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql++Le+ F + n +ps+++++e+++ l +++e++V++WFqNrRa+ k+ Zpz_sc01437.1.g00130.1.sm.mkhc 91 RQRWQPTPMQLQILENIFDQgNGTPSKQKIKEITADLshhgQISETNVYNWFQNRRARSKR 151 89***************99************************************97 PP
2	Wus_type_Homeobox	100.4	1.3e-32	90	153	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW Ptp Q++iLe+++++G tP+k++i++ita L+++G+i+++NV++WFQNr+aR+++kq Zpz_sc01437.1.g00130.1.sm.mkhc 90 TRQRWQPTPMQLQILENIFDQGNGTPSKQKIKEITADLSHHGQISETNVYNWFQNRRARSKRKQ 153 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.9E-17	86	157	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.803	87	152	IPR001356	Homeobox domain
SMART	SM00389	5.6E-14	89	156	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.89E-18	90	155	IPR009057	Homeodomain-like
Pfam	PF00046	6.3E-19	91	151	IPR001356	Homeobox domain
CDD	cd00086	9.91E-13	91	153	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MEWGDRATAA AAATEEAEER GGEPLGYVKV MTDEQMEVLR KQISIYATIC EQLVEMHRAL 60 AEHQDSIAGM RFSNLYCDPL IVPGGHKITT RQRWQPTPMQ LQILENIFDQ GNGTPSKQKI 120 KEITADLSHH GQISETNVYN WFQNRRARSK RKQAAALPNN VESEAEADEE SLTDKKPNSD 180 MQLQQSKALN VHNADRFSEM HHIQRDQMSA MMYGSNDNNL RSSGSSGQMS FYENIMSNPR 240 IDQFSGKVEN SRSFSHLQYG EGSDIWSREK KGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	152	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01437.1.g00130.1.sm.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT829376	1e-149	CT829376.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA218C10, full insert sequence.
GenBank	CT829377	1e-149	CT829377.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA244H01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002456540.1	1e-155	WUSCHEL-related homeobox 8
Refseq	XP_025815130.1	1e-155	WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	1e-121	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A2S3HQI6	1e-153	A0A2S3HQI6_9POAL; Uncharacterized protein
TrEMBL	C5XN90	1e-153	C5XN90_SORBI; Uncharacterized protein
STRING	Sb03g038080.1	1e-154	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	4e-57	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]