PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01431.1.g00230.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 278aa    MW: 29557.3 Da    PI: 7.6977
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01431.1.g00230.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.71e-161462148
                                    TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                    rg+W +eEde+l ++v+++G g +W + +++ g++R++k+c++rw++yl
  Zpz_sc01431.1.g00230.1.sm.mkhc 14 RGPWAPEEDEKLRRYVQKHGIGgNWIALPQKAGLNRCGKSCRLRWLNYL 62
                                    89******************999************************97 PP
2Myb_DNA-binding39.51.3e-1271111446
                                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                      T+eEd ++  + +  G++ W+ Ia++++ gRt++++k++w++
  Zpz_sc01431.1.g00230.1.sm.mkhc  71 YTEEEDRIICSLYNSIGSR-WSIIASKLP-GRTDNDVKNYWNT 111
                                     79*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.374966IPR017930Myb domain
SuperFamilySSF466891.14E-2811109IPR009057Homeodomain-like
SMARTSM007171.6E-111364IPR001005SANT/Myb domain
PfamPF002494.6E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-251569IPR009057Homeodomain-like
CDDcd001671.50E-91662No hitNo description
PROSITE profilePS5129415.40767117IPR017930Myb domain
SMARTSM007172.8E-1267115IPR001005SANT/Myb domain
PfamPF002492.9E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2270116IPR009057Homeodomain-like
CDDcd001672.49E-971111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGRAPCCDKA SVKRGPWAPE EDEKLRRYVQ KHGIGGNWIA LPQKAGLNRC GKSCRLRWLN  60
YLRPDIKHGG YTEEEDRIIC SLYNSIGSRW SIIASKLPGR TDNDVKNYWN TKLKKKAMAA  120
AAAASYSSGG AFAASATPSA LSPAASASSS VTSSSSGDGF FATFAQPQGL IRFDAPPCWS  180
PAELTPVPPP TASLDGAAGV WASAPAGDAV AMDDAFLQEF VGGDQLFSYG DFFGGLQPQD  240
RALELSACYF PNNMAEMWGA AAADHAHAKP QGLCNTLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01431.1.g00230.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794301e-150HF679430.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB24 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654754.11e-120PREDICTED: transcription factor RAX1-like
TrEMBLJ3M9J11e-119J3M9J1_ORYBR; Uncharacterized protein
STRINGOB05G32650.11e-120(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-70myb domain protein 36