PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01413.1.g00080.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 861aa    MW: 94561 Da    PI: 10.2133
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01413.1.g00080.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.85.9e-14707751347
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   +WT+eE++l++ + k++G g+W+ I+r + + Rt+ q+ s+ qky
  Zpz_sc01413.1.g00080.1.am.mk 707 PWTEEEHKLFLMGLKKYGRGDWRNISRNFVTSRTPTQVASHAQKY 751
                                   8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0055594646IPR001005SANT/Myb domain
PROSITE profilePS500905.947596644IPR017877Myb-like domain
SuperFamilySSF466893.66E-9596651IPR009057Homeodomain-like
CDDcd001673.34E-4598640No hitNo description
PROSITE profilePS5129417.568700756IPR017930Myb domain
SuperFamilySSF466895.81E-17702756IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-16703754IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.1E-12704750IPR009057Homeodomain-like
SMARTSM007175.8E-13704754IPR001005SANT/Myb domain
PfamPF002492.8E-11707751IPR001005SANT/Myb domain
CDDcd001671.48E-10707752No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 861 aa     Download sequence    Send to blast
MLWQPGGGRQ RLCVVRSPNH VKVLELSVTR KRARHPKWPS KKWPALLRAC ELPGRKKGTV  60
YSYTRPMRGA RFTVASKEAK GREKEKFAHG NCKKKQRTMI ACCLDVWTAG FDRSTGFPDH  120
CESAALLGFV PLGDRRSFCR NESYYYPRGS TATAPCPLAV SMQRGSRRYS ETGRRQFAWP  180
VCGQGGIQDT TRQAAQRAQG QEAQDQPLLR RQGHSGEYSK RDISLPYRRR GSEFFLRLII  240
AGRLDFEGAV VVVVAWPLPL VLLFCGCPVE TCLPWSKVDS GGGVVPAGVP SEASRAFWGM  300
PVCRPRGADM GVRACVFGAA FWPSIPRLSC VQYQLARRCR NDSNVGAMAA DRWRAGRVRA  360
PERLAVSVLA FHDLERKGRG GRANVVVILV VLVGLQEPRD GSPGRKALEI GEVGLREEAD  420
GLLLGRGLPG FPLRHVTEAS QNTPGGKDAR CLFGGISSLP QRASSLRLDL CREEATAATA  480
PGTVLHVAPP SSSSSSALMI PAKAATYYRA IGSRHRTPRR TTKATRIPAH VHHRPVHKYP  540
FFPSAPTLSP ASGLAISRAE MMKESWMEVL PSPPATRFAA QAAGGWFLQD RQPVPGVWTL  600
EENKMFETAL ASVDWDAPDR WECVASMLPG RTVADVVSHF DDLENDVHFI EAGLMPLPHY  660
GAGDDSQSAA GFTFDWDAGD LGFKRSCYVV GGKRGRGQDQ ERKKGVPWTE EEHKLFLMGL  720
KKYGRGDWRN ISRNFVTSRT PTQVASHAQK YFIRLNSGGK DKRRSSIHDI TTVNLPDEGS  780
SNPSPSPPSV LTATSTPSSG GTVMSEQFGV MDSKPPPPPM GQHNHFLPHP YGNVKLEPHH  840
GGLFDDSVLM QMQCGQLQPL G
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01413.1.g00080.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.13e-74MYB family protein