PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01409.1.g00120.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 192aa MW: 21489.2 Da PI: 10.6532 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.3 | 2.1e-09 | 22 | 54 | 1 | 33 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgk 33 +g W++eEd++l + ++++G tW+++a+ gk Zpz_sc01409.1.g00120.1.am.mk 22 KGLWSPEEDDRLFNQITLHGVSTWSSVAQLAGK 54 678****************************93 PP | |||||||
2 | Myb_DNA-binding | 43.5 | 7.4e-14 | 71 | 112 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + ++ E+e ++ + + lG++ W++Ia++m+ gRt++++k++w++ Zpz_sc01409.1.g00120.1.am.mk 71 PISKREEEVIISLQRSLGNR-WSAIAAKMP-GRTDNEIKNYWNS 112 56889***************.*********.***********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.411 | 17 | 55 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.04E-18 | 21 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6 | 21 | 66 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-8 | 21 | 54 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.3E-6 | 22 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-20 | 64 | 118 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.362 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-12 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-11 | 71 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.12E-9 | 71 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MVRKPSHDDA GRPGTGENKE RKGLWSPEED DRLFNQITLH GVSTWSSVAQ LAGKKITSHF 60 HWCLPGLKKE PISKREEEVI ISLQRSLGNR WSAIAAKMPG RTDNEIKNYW NSRIRKRLNP 120 AAKPGRARAA GNSAEEPVPA AERTEESTDK AGTSAHPGAS SITRRTCSWM YPASWTRGRG 180 DLYWVNPMRS VN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-17 | 22 | 118 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01409.1.g00120.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817319.1 | 5e-60 | myb-related protein Hv33-like | ||||
Swissprot | P20027 | 2e-30 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | A0A2T7DRN8 | 1e-60 | A0A2T7DRN8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J24104.1.p | 2e-60 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8703 | 25 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 6e-31 | myb domain protein 86 |