PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01409.1.g00110.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 295aa    MW: 32814.8 Da    PI: 7.8298
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01409.1.g00110.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.8e-151663148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g W++eEde+l+  ++++G  +W++I++  g+ R++k+c++rw +yl
  Zpz_sc01409.1.g00110.1.am.mk 16 KGLWSPEEDERLASHIARFGVSCWSSIPELTGLQRCGKSCRLRWMNYL 63
                                  678*******************************************97 PP
2Myb_DNA-binding46.67.7e-1569111145
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                   rgr++++E++l++ ++k lG+  W+ Ia+ ++ gR+++++k++w+
  Zpz_sc01409.1.g00110.1.am.mk  69 RGRFSQQEEDLIIALHKTLGNS-WSQIAASLP-GRSDNEIKNFWN 111
                                   89******************99.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.9E-23866IPR009057Homeodomain-like
PROSITE profilePS5129422.3281167IPR017930Myb domain
SuperFamilySSF466892.3E-2714110IPR009057Homeodomain-like
SMARTSM007173.4E-111565IPR001005SANT/Myb domain
PfamPF002493.5E-141663IPR001005SANT/Myb domain
CDDcd001676.08E-101963No hitNo description
Gene3DG3DSA:1.10.10.602.2E-2467118IPR009057Homeodomain-like
SMARTSM007171.5E-1468116IPR001005SANT/Myb domain
PROSITE profilePS5129417.26168118IPR017930Myb domain
PfamPF002492.6E-1369111IPR001005SANT/Myb domain
CDDcd001676.79E-1071111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGRAHPCCSE EKKLRKGLWS PEEDERLASH IARFGVSCWS SIPELTGLQR CGKSCRLRWM  60
NYLRPDLKRG RFSQQEEDLI IALHKTLGNS WSQIAASLPG RSDNEIKNFW NARLRKMLRQ  120
REASTAGSKD PAVLRSRHRG EDDERKLQLP SAMFNPLCAA RVEDQPWGTA DHTMVSAVTS  180
NTSCEDVVDY TTPGAVIADA HDRRNAAAAA ELQTLSASST EAVGGSEDDF LRAMVEEASH  240
LFGDFYNIDG SQDGRISFWE GHTVQNAQLT PIKRDLVSSK VPKALHRQSA GIPAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-271411825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01409.1.g00110.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817318.11e-109myb-related protein Hv33-like
TrEMBLA0A3L6SVX51e-110A0A3L6SVX5_PANMI; Transcription factor MYB82-like
STRINGPavir.Eb00460.1.p1e-109(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144481725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.32e-59myb domain protein 55