PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01397.1.g00150.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 229aa    MW: 23602.4 Da    PI: 10.5338
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01397.1.g00150.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.66.4e-4027124398
                           TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssss 81 
                                   ++k +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++  +++s+sss
  Zpz_sc01397.1.g00150.1.am.mk  27 VRKAPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSttSPSSRSSS 107
                                   689************************************************************999998888888888888 PP

                           TCP  82 asnsssg..kaaksaaksk 98 
                                   +++++++  +aa++++   
  Zpz_sc01397.1.g00150.1.am.mk 108 QQAPQIQlpSAAPAHH--V 124
                                   8888888553333333..2 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.2093286IPR017887Transcription factor TCP subgroup
PfamPF036348.8E-3432111IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MTTRPADGGG GGGDKQLVPA SNNAHGVRKA PSKDRHSKVD GRGRRIRMPI ICAARVFQLT  60
RELGHKSDGQ TIEWLLRQAE PSIIAATGTG TTPASFSTTS PSSRSSSQQA PQIQLPSAAP  120
AHHVLPHAAA AAPFILGKRV RGANDDTEVT AVGPAAGFWA LPARADFGQL WSFAAAPDMM  180
VAAVPEEASA ARYLPVAQAQ GNLNLLASFS GGPAGNGATA ARAEEESAR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01397.1.g00150.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2407981e-103AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence.
GenBankAP0047761e-103AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04.
GenBankAP0149581e-103AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-103CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814152.14e-85transcription factor TCP7-like
SwissprotQ9FMX22e-66TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A0A9JXS18e-86A0A0A9JXS1_ARUDO; Uncharacterized protein
STRINGOMERI02G35320.14e-80(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.11e-44TCP family protein