PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01389.1.g00050.1.am.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

FAR1

Protein Properties

Length: 417aa MW: 46967.5 Da PI: 11.2206

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01389.1.g00050.1.am.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22.2	4.7e-07	360	416	1	67
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklk 67 ++Yn Y+ e GF +r s+ + rn+ + ++++vC ++g++e+++k+ + r++Ck kl+ Zpz_sc01389.1.g00050.1.am.mkhc 360 NYYNLYSWERGFGIRCGGSEIN-RNQCVLMKELVCMCQGRPETNTKT---------SIRCDCKSKLV 416 69*************99998.7777***********9998777.........78888887775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-4	360	415	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MDIWRTRSGK PDRRWCADSS RQESRAARQL MVDNCTLRSG VTTTHLPSAN GHRAQARSFL 60 PTGRAHARLL ARARHPHGRG VVSACNLWSE PFVSFTVHTP WRPDAHALRS PLYKDFLLCR 120 AAAMDGSTIR CAIKIRARAG RRGLHKKKAQ PSPPLLPVTL SCFRPLHRIL GIAASLGFVE 180 GTSVSDGSSW HQQRRRLWER HYGADVRFYF VPRVHIARSL ADPVACFIVV VEWLRRSHKG 240 VISGRPARLR VKEAGIHPGW LMKLMLVKCA HYGSANAFGL VQFGRRFQIP SKRVSNLRAG 300 THKLRMAIQL GVRGPAERTP ASGRVAPIEE AQLSFKDRPE ECVIILKVGV TFDSYEEGFN 360 YYNLYSWERG FGIRCGGSEI NRNQCVLMKE LVCMCQGRPE TNTKTSIRCD CKSKLVL

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MDIWRTRSGK PDRRWCADSS RQESRAARQL MVDNCTLRSG VTTTHLPSAN GHRAQARSFL  60
PTGRAHARLL ARARHPHGRG VVSACNLWSE PFVSFTVHTP WRPDAHALRS PLYKDFLLCR  120
AAAMDGSTIR CAIKIRARAG RRGLHKKKAQ PSPPLLPVTL SCFRPLHRIL GIAASLGFVE  180
GTSVSDGSSW HQQRRRLWER HYGADVRFYF VPRVHIARSL ADPVACFIVV VEWLRRSHKG  240
VISGRPARLR VKEAGIHPGW LMKLMLVKCA HYGSANAFGL VQFGRRFQIP SKRVSNLRAG  300
THKLRMAIQL GVRGPAERTP ASGRVAPIEE AQLSFKDRPE ECVIILKVGV TFDSYEEGFN  360
YYNLYSWERG FGIRCGGSEI NRNQCVLMKE LVCMCQGRPE TNTKTSIRCD CKSKLVL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01389.1.g00050.1.am.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP71550	2	2