PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01379.1.g00070.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 399aa    MW: 44384 Da    PI: 8.9941
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01379.1.g00070.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.3e-1894143155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  Zpz_sc01379.1.g00070.1.sm.mk  94 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 143
                                   78*******************......55************************998 PP
2AP237.18.1e-12191241155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+++GV+++k  g+W+A+I         +k+++lg + t+ eAa+ +++a+ k +g
  Zpz_sc01379.1.g00070.1.sm.mk 191 SRFRGVTQHK-CGKWEARIGQlM----GKKYVYLGLYETEMEAAQVYDKAAIKCFG 241
                                   789*******.7******77733....25**********77**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-1094143IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-1694152IPR016177DNA-binding domain
PROSITE profilePS5103217.79495151IPR001471AP2/ERF domain
CDDcd000189.61E-1195150No hitNo description
Gene3DG3DSA:3.30.730.101.2E-1795151IPR001471AP2/ERF domain
SMARTSM003801.5E-3095157IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-16191249IPR016177DNA-binding domain
PfamPF008475.6E-7191239IPR001471AP2/ERF domain
CDDcd000181.88E-23191251No hitNo description
PROSITE profilePS5103214.908192249IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-15192249IPR001471AP2/ERF domain
SMARTSM003802.0E-31192255IPR001471AP2/ERF domain
PRINTSPR003676.0E-5193204IPR001471AP2/ERF domain
PRINTSPR003676.0E-5231251IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MADAKRAFHF DGVAREEGGA RRGEGAGMIF GFPVVPGPTA VTQQLFPAPV PARQHQQQVM  60
EQCHAVAAAA TAAAEPWARS SLRKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY  120
LGGFDTAQAA ARAYDQAAIK FRGMSADINF SLDDYKDDIK KHCSCQMNSF SKEEFIQVLR  180
RQGAGFVRGS SRFRGVTQHK CGKWEARIGQ LMGKKYVYLG LYETEMEAAQ VYDKAAIKCF  240
GKEAVTNFDP HAYHSEPQLQ SWDGELDLEL SLGGASGERG GDHTTVAGEA FNPTPGRQRT  300
SLTKNHGHRL CFMPENQLEL PEEDETIAGY LHRSIRATPL PSPATPPVRG ALGHQYRRVD  360
DLAPFPSSRS TTMHMLQMLA RYVQNAAPVP FDMSCDYAR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01379.1.g00070.1.sm.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642711.11e-131ethylene-responsive transcription factor RAP2-7
SwissprotA0A0N7KMH01e-132AP24_ORYSJ; APETALA2-like protein 4
TrEMBLA0A3L6RYR21e-134A0A3L6RYR2_PANMI; Uncharacterized protein
STRINGLPERR06G18460.11e-132(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118213439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.23e-78AP2 family protein
Publications ? help Back to Top
  1. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  2. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]