PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01346.1.g00190.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 583aa    MW: 62655.4 Da    PI: 9.4978
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01346.1.g00190.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.12.8e-154291255
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                  +y+GVr+++ +gr++AeIrdp     +  r +lg+f+tae+Aa a++ a++ ++g
  Zpz_sc01346.1.g00190.1.am.mk 42 RYRGVRRRP-WGRFAAEIRDPM----SkERRWLGTFDTAEQAACAYDFAARVMRG 91
                                  69*******.**********84....35999*******************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.61E-2541101No hitNo description
PROSITE profilePS5103222.6294299IPR001471AP2/ERF domain
SMARTSM003802.8E-3342105IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-2142100IPR016177DNA-binding domain
PfamPF008471.0E-84291IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-2942100IPR001471AP2/ERF domain
PRINTSPR003679.3E-94354IPR001471AP2/ERF domain
PRINTSPR003679.3E-96581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MDDTAADAHL YGHTHTHNHR SRRSSRTGAV DEDGDVSPKG ARYRGVRRRP WGRFAAEIRD  60
PMSKERRWLG TFDTAEQAAC AYDFAARVMR GNKARTNFPV QATAGCWPWG PSQVAAPDHP  120
LRPFILHNLL MSSSHHGGCR LLQHAALGHT NVASATNRPP PVPPPRPCST ASSPSGTVTT  180
PVGAVTSSVA SPLGAQLDDD DDDDVWGSLL QGDPPGAGLL QDALHDFYPS TRPRGTSRKP  240
GADSIVRART KHDWNEAFRT ASTYGGDDVD EDGDCPMIPQ GLLGDMIQVP SFVDFRGRAV  300
RSPVPRPTDL MDPARTLQPS HATLVDPATG VHHILLHARM HSVAAGCTGV NFLSPGNAAR  360
TTKLVLGAKE PSRRIPPVPA NCSPCVRGPR AVAVARERQA DGMMEVKALS RKQSVRIARI  420
QSAHDFKSAL SYCSCALALI SEANGSAGGR QKVEADAEIR AQRTPSALTY RQAGQRAGGH  480
DRGRSRSMRC SRALPRWFHS VLGSSGALAL WAPPEDVPCP ALAKDLSMRH DDMRGYGSSS  540
VLLLIGSSFC NGRSDGTDGR KKQATLAGED GVMPWLFRAN TTH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1939105269ATERF1
3gcc_A2e-1939105269ATERF1
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01346.1.g00190.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9548779e-88EU954877.1 Zea mays clone 1489895 AP2 domain containing protein mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72633050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.19e-20DORNROSCHEN-like