PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01334.1.g00060.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 291aa    MW: 31675.3 Da    PI: 9.5249
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01334.1.g00060.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.25.2e-10534130
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                                    ++rWT+eE+  l+ +v+++G+g W+tI r 
  Zpz_sc01334.1.g00060.1.sm.mkhc  5 KQRWTAEEEAALKAGVARHGPGKWRTILRD 34
                                    79*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.087151IPR017930Myb domain
SuperFamilySSF466892.02E-9250IPR009057Homeodomain-like
PfamPF002492.2E-6533IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-9550IPR009057Homeodomain-like
CDDcd116601.67E-14678No hitNo description
SuperFamilySSF467853.97E-6143182IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.0E-6145181IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.0E-4150181IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGAPKQRWTA EEEAALKAGV ARHGPGKWRT ILRDPDFGPL LSLRSNVDLK VDPAARRGSR  60
GGSAGRFCEF AGDKWRNLSV TAGGYGSREK ARMALKKGRH VPKVPAESME VDEYHMDNVH  120
NAFLDVQPLA MVVEPLQLGD SPDKSVVRLD EIILEAIKNL KKASGSNKAA IASYIEVNQK  180
YRIAPTSPSL GGKSTKLYSM EEMNRENNVK QLAKPQVDSK LEKMRSMTKE EAAVFAAKAV  240
AEAEVAIAEA EEAARVAEAA EADAEAAKVF LEAVTVTIRN RNVASMMLRA C
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01334.1.g00060.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794601e-46HF679460.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB54 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818200.11e-114single myb histone 1
SwissprotB4FT401e-100SMH2_MAIZE; Single myb histone 2
TrEMBLA0A3L6SQP01e-119A0A3L6SQP0_PANMI; Single myb histone 1-like
STRINGPavir.Ea02064.1.p1e-114(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-42telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]