PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01325.1.g00050.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 267aa    MW: 28639.2 Da    PI: 6.607
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01325.1.g00050.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.25.2e-151461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g WT+eEd +lv     +G  +W+++++  g+ R++k+c++rw +yl
  Zpz_sc01325.1.g00050.1.sm.mk 14 KGTWTAEEDHKLVTFLLSHGHCCWRLVPKLAGLLRCGKSCRLRWTNYL 61
                                  799*****************************99************97 PP
2Myb_DNA-binding52.21.4e-1670111447
                                   S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                    + eE+ l +d+++qlG++ W++Ia++++ +Rt++++k++w+++
  Zpz_sc01325.1.g00050.1.sm.mk  70 LSDEEEALVIDLHAQLGNR-WSKIAARIP-RRTDNEIKNHWNTH 111
                                   589****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-20562IPR009057Homeodomain-like
PROSITE profilePS5129414.095961IPR017930Myb domain
SuperFamilySSF466892.21E-2511108IPR009057Homeodomain-like
SMARTSM007179.2E-111363IPR001005SANT/Myb domain
PfamPF002491.1E-131461IPR001005SANT/Myb domain
CDDcd001671.01E-81661No hitNo description
PROSITE profilePS5129426.94762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.4E-2463116IPR009057Homeodomain-like
SMARTSM007171.1E-1466114IPR001005SANT/Myb domain
PfamPF002491.9E-1470111IPR001005SANT/Myb domain
CDDcd001672.75E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGTWTAE EDHKLVTFLL SHGHCCWRLV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SDEEEALVID LHAQLGNRWS KIAARIPRRT DNEIKNHWNT HIKKKLRKMG  120
IDPVTHRPLS PAAQSGEPLT QQQCQDPPQD EPKTSSQRPA GGNEDDDGNE EAPVSAAQPQ  180
LAAASPASAA ATVSLSCSSS ASASVTTTPG ADVAAWSDPV DLFEVDGIMD MDWAGILSGC  240
GGDGAICSTT TLAMASINKS GCDADSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01325.1.g00050.1.sm.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9646201e-135EU964620.1 Zea mays clone 280394 odorant 1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953828.11e-121protein ODORANT1
SwissprotQ9C7U75e-83MYB20_ARATH; Transcription factor MYB20
TrEMBLK3Z1081e-120K3Z108_SETIT; Uncharacterized protein
STRINGSi020225m1e-120(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.16e-82myb domain protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]