PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01325.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family CO-like
Protein Properties Length: 822aa    MW: 89189.3 Da    PI: 9.638
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01325.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.77.5e-06383418938
                      zf-B_box   9 HeekelqlfCedCqqllCedClleeHkg......Ht 38 
                                   + + +++++C  ++ +lC+ C  + H+       H+
  Zpz_sc01325.1.g00020.1.am.mk 383 CLRRRARWYCAADDAFLCQACDASVHSAnplarrHE 418
                                   667789********************6566766776 PP
2CCT66.19.8e-23761804144
                           CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                   Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++
  Zpz_sc01325.1.g00020.1.am.mk 761 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRP 804
                                   9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.9E-6377422IPR000315B-box-type zinc finger
CDDcd000211.93E-7382422No hitNo description
PROSITE profilePS5101715.993761803IPR010402CCT domain
PfamPF062031.1E-17761803IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 822 aa     Download sequence    Send to blast
MGKGYVLLYP GLTCNDSSRY PSTDAHLGSS IGDHPARSSP ASRTSPSPAG SGAVAPPHLA  60
GTTEIIPTVH ADRPAHGGAA LLRRLASAIP NEGLTAPRHP QATRSVRRRE LLLPSNPINR  120
RGRARASPGL SEHLPDAGWL GLGTALRSTL VGRTAHCGAA AAVRRSPAKW QVNARIHQSG  180
RLIGPAKMGA CGAGQEGAAW DEEEGKRHRS APSLPRRGEG GNAWSERDAA VGLDFGIVGF  240
EKTQRPLLAY YNTDTGRALR PVTSPRQRWR HRIRPTPGCG TGYTPGWEGA RRIVVMCFLE  300
GWTKGWARRV FVRPHSCFSN VSQIQAVAPG KIQACPMAYR RTGSDKACAW ALTSTLKVES  360
TLVTAAEVSR KEHLLGQAAL IRCLRRRARW YCAADDAFLC QACDASVHSA NPLARRHERL  420
RLRPTSPPPH ESSLDQTIAA RSTSTQRRPV APAWSRRKAR SRRPQVKSVG QLLSRKLVVP  480
ELAAESSEER KAEEDGSEET QLLCHRVPSF DRALAELCSP LPVDDAAAAA SSSRDNIDAA  540
VEDASKQDSV DATSSPVQQL PGSLSSFGPT DAELREFAAD MEALLGQGMD DSNELDESFY  600
MESLGLMTPV EDDGGRVKME PHGDISNCDG AFGIGRHTDM KSVASAEVLD IDSKIPNCCS  660
PTAVGDEDYE DSFEQKAPMA SNGDAPDAQF LRRSLDLRLN YEAIIESWGT TPWTDGQRPC  720
VRLDDFWPHH AYHSGAWTPG GGQPPGFGPL TPPRWGTDGC REARVSRYRE KRRTRLFAKK  780
IRYEVRKLNA EKRPRMKGRF VKRPAAGAGG GAAVTPASRR PS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1771787RRTRLFAKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01325.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3565354e-60AK356535.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1036A10.
GenBankAK3583704e-60AK358370.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1075C13.
GenBankJQ7912384e-60JQ791238.1 Hordeum vulgare subsp. vulgare cultivar OWB-D K (K) gene, partial cds.
GenBankJQ7912394e-60JQ791239.1 Hordeum vulgare subsp. vulgare cultivar OWB-R K (K) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661075.11e-174zinc finger protein CONSTANS-LIKE 16 isoform X1
TrEMBLA0A3Q8AVS71e-179A0A3Q8AVS7_BAMOL; Constans-like protein
TrEMBLA0A3S6KAH51e-179A0A3S6KAH5_9POAL; COLK
STRINGSi017124m1e-173(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32833058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.13e-47B-box type zinc finger protein with CCT domain