PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01315.1.g00170.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 319aa MW: 34541.4 Da PI: 9.1384 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.8 | 9.3e-17 | 57 | 102 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+q+G+ +W+ Ia+++ gR++k+c++rw++ Zpz_sc01315.1.g00170.1.am.mk 57 RGHWRPAEDAKLKELVAQHGPQNWNIIAEKLD-GRSGKSCRLRWFNQ 102 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 57 | 4.6e-18 | 109 | 153 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ + Zpz_sc01315.1.g00170.1.am.mk 109 RRTFSEEEEERLLAAHRAYGNK-WALIARLFP-GRTDNAVKNHWHVL 153 6689******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.253 | 52 | 103 | IPR017930 | Myb domain |
SMART | SM00717 | 7.1E-14 | 56 | 105 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.03E-28 | 57 | 154 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.2E-16 | 57 | 102 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-26 | 58 | 110 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.28E-13 | 60 | 101 | No hit | No description |
PROSITE profile | PS51294 | 27.1 | 104 | 158 | IPR017930 | Myb domain |
SMART | SM00717 | 7.1E-16 | 108 | 156 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-15 | 109 | 153 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-20 | 111 | 156 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.91E-8 | 120 | 154 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MVGFFGTVPH PASHMGPSFQ DEREQQVVAE DVYDVEDGGA GYGGGGGAGA QGKLCARGHW 60 RPAEDAKLKE LVAQHGPQNW NIIAEKLDGR SGKSCRLRWF NQLDPRINRR TFSEEEEERL 120 LAAHRAYGNK WALIARLFPG RTDNAVKNHW HVLMARRQRE QAGSLRRRKP ASSSSSSSTP 180 PPAPRPQRFA PVVVFHHQYH YGSPPPLTFH AAAGAQEASR AYSGCGGGAV DSDESASTCT 240 TDLSLGSAGA APVPYFHQST YRTDYCLIRY DMAPRAAPSA FAPSPRSAFS APSPARHRDS 300 SGGDKPALPF FDFLGVGAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 1e-32 | 57 | 157 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 1e-32 | 57 | 157 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01315.1.g00170.1.am.mk |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU964855 | 1e-150 | EU964855.1 Zea mays clone 282116 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002457638.1 | 1e-116 | transcription factor MYB117 | ||||
Swissprot | Q5NBM8 | 3e-96 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | C5XH76 | 1e-114 | C5XH76_SORBI; Uncharacterized protein | ||||
STRING | Sb03g010960.1 | 1e-115 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17800.1 | 1e-63 | myb domain protein 56 |