PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01315.1.g00170.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 319aa    MW: 34541.4 Da    PI: 9.1384
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01315.1.g00170.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.3e-1757102147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg W + Ed +l+++v+q+G+ +W+ Ia+++  gR++k+c++rw++ 
  Zpz_sc01315.1.g00170.1.am.mk  57 RGHWRPAEDAKLKELVAQHGPQNWNIIAEKLD-GRSGKSCRLRWFNQ 102
                                   899*****************************.***********996 PP

2Myb_DNA-binding574.6e-18109153147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   r  +++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ +
  Zpz_sc01315.1.g00170.1.am.mk 109 RRTFSEEEEERLLAAHRAYGNK-WALIARLFP-GRTDNAVKNHWHVL 153
                                   6689******************.*********.***********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.25352103IPR017930Myb domain
SMARTSM007177.1E-1456105IPR001005SANT/Myb domain
SuperFamilySSF466897.03E-2857154IPR009057Homeodomain-like
PfamPF002498.2E-1657102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-2658110IPR009057Homeodomain-like
CDDcd001673.28E-1360101No hitNo description
PROSITE profilePS5129427.1104158IPR017930Myb domain
SMARTSM007177.1E-16108156IPR001005SANT/Myb domain
PfamPF002494.7E-15109153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-20111156IPR009057Homeodomain-like
CDDcd001676.91E-8120154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MVGFFGTVPH PASHMGPSFQ DEREQQVVAE DVYDVEDGGA GYGGGGGAGA QGKLCARGHW  60
RPAEDAKLKE LVAQHGPQNW NIIAEKLDGR SGKSCRLRWF NQLDPRINRR TFSEEEEERL  120
LAAHRAYGNK WALIARLFPG RTDNAVKNHW HVLMARRQRE QAGSLRRRKP ASSSSSSSTP  180
PPAPRPQRFA PVVVFHHQYH YGSPPPLTFH AAAGAQEASR AYSGCGGGAV DSDESASTCT  240
TDLSLGSAGA APVPYFHQST YRTDYCLIRY DMAPRAAPSA FAPSPRSAFS APSPARHRDS  300
SGGDKPALPF FDFLGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-32571574104C-Myb DNA-Binding Domain
1msf_C1e-32571574104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01315.1.g00170.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9648551e-150EU964855.1 Zea mays clone 282116 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457638.11e-116transcription factor MYB117
SwissprotQ5NBM83e-96CSA_ORYSJ; Transcription factor CSA
TrEMBLC5XH761e-114C5XH76_SORBI; Uncharacterized protein
STRINGSb03g010960.11e-115(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.11e-63myb domain protein 56
Publications ? help Back to Top
  1. Leonard LM,Follette VM
    Sexual functioning in women reporting a history of child sexual abuse: review of the empirical literature and clinical implications.
    Annu Rev Sex Res, 2002. 13: p. 346-88
    [PMID:12836736]
  2. Wang L,Li X,Chen Z
    Sulfated modification of the polysaccharides obtained from defatted rice bran and their antitumor activities.
    Int. J. Biol. Macromol., 2009. 44(2): p. 211-4
    [PMID:19135473]
  3. Wang L,Huang H,Wei Y,Li X,Chen Z
    Characterization and anti-tumor activities of sulfated polysaccharide SRBPS2a obtained from defatted rice bran.
    Int. J. Biol. Macromol., 2009. 45(4): p. 427-31
    [PMID:19549538]
  4. Zhang H, et al.
    Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development.
    Plant Cell, 2010. 22(3): p. 672-89
    [PMID:20305120]
  5. Zhang H, et al.
    Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(1): p. 76-81
    [PMID:23256151]
  6. Zhu X, et al.
    Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein.
    Plant J., 2015. 82(4): p. 570-81
    [PMID:25754973]
  7. Li X, et al.
    Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.
    Plant Cell Environ., 2015. 38(10): p. 2171-92
    [PMID:25828772]
  8. Shaar-Moshe L,Hübner S,Peleg Z
    Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach.
    BMC Plant Biol., 2015. 15: p. 111
    [PMID:25935420]