PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01308.1.g00040.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | RAV | ||||||||
Protein Properties | Length: 359aa MW: 39664.5 Da PI: 9.347 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.1 | 7.9e-12 | 68 | 117 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 s+ykGV + +grW A+I++ r +r++lg+f +e Aa+a + a+++++g+ Zpz_sc01308.1.g00040.1.am.mk 68 SRYKGVVPQP-KGRWGAQIYE------RhARVWLGTFPDEEAAARAFDVAARRFRGH 117 78****9888.7*********......44*************************997 PP | |||||||
2 | B3 | 77.4 | 1.6e-24 | 181 | 276 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS.....-EEEEEE..EEETTEEEE-TTHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesg.....rsWevkliyrkksgryvltkGWkeF 68 f+k+ tpsdv++++rlv+pk +ae+h + + + ++ l +ed + ++W+++++y+ +s++yvlt+GW++F Zpz_sc01308.1.g00040.1.am.mk 181 FEKAVTPSDVGRLNRLVVPKVHAEKHfpplsekdDDDDAAPVLLAFEDADPnggngKVWRFRFSYWSSSQSYVLTRGWSRF 261 89****************************99996667899999999965455888************************* PP HHHHT--TT-EEEEE CS B3 69 vkangLkegDfvvFk 83 v+++gL +gD+++F+ Zpz_sc01308.1.g00040.1.am.mk 262 VREKGLAAGDTITFS 276 **************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.85E-16 | 68 | 124 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.7E-7 | 68 | 117 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.33E-11 | 68 | 124 | No hit | No description |
PROSITE profile | PS51032 | 20.784 | 69 | 124 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-20 | 69 | 124 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.8E-23 | 69 | 130 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-5 | 70 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-5 | 90 | 106 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 4.5E-33 | 173 | 278 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.22E-26 | 176 | 276 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.22E-24 | 179 | 275 | No hit | No description |
SMART | SM01019 | 9.1E-16 | 181 | 290 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.633 | 181 | 292 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-21 | 181 | 276 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MLTLASWHRE HQSMYGWLYH KHQRRRSRSS PLFHHFPLCR RTAMSTPSST QEEAQRAGMV 60 ASQAAPASRY KGVVPQPKGR WGAQIYERHA RVWLGTFPDE EAAARAFDVA ARRFRGHDAA 120 VNFPGPADAD ELAFLAARPK AEVVDMLRKH TYDDELRQGL RSVSGGGGVC EADPVPRTPL 180 FEKAVTPSDV GRLNRLVVPK VHAEKHFPPL SEKDDDDDAA PVLLAFEDAD PNGGNGKVWR 240 FRFSYWSSSQ SYVLTRGWSR FVREKGLAAG DTITFSQATT PPTPTTTSAD GEAYTARRLF 300 IECRKRKRTR TDSDGSVVVD GCPDHGGDAR VVRLFGANIA AAIGGHAFVE VEPQLQVGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 4e-37 | 180 | 279 | 13 | 104 | DNA-binding protein RAV1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01308.1.g00040.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806570.1 | 1e-113 | AP2/ERF and B3 domain-containing protein Os01g0141000-like | ||||
Swissprot | Q9AWS7 | 5e-92 | Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700 | ||||
TrEMBL | A0A3L6R5X1 | 1e-116 | A0A3L6R5X1_PANMI; Uncharacterized protein | ||||
STRING | Traes_3B_68BFA25F1.1 | 1e-99 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 2e-75 | related to ABI3/VP1 1 |