PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01287.1.g00110.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ARR-B
Protein Properties Length: 158aa    MW: 17923.2 Da    PI: 5.6589
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01287.1.g00110.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like29.91.3e-09131152122
                       G2-like   1 kprlrWtpeLHerFveaveqLG 22 
                                   kpr++W+ eLH++Fv av+qLG
  Zpz_sc01287.1.g00110.1.sm.mk 131 KPRVVWSVELHRKFVAAVNQLG 152
                                   79*******************6 PP
2Response_reg28.38.8e-1115356109
                                   SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                  Response_reg  56 mdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                                   mdG++ll+     e++lp+i+++ +ge + + + +  Ga d+l Kp+ +eel++
  Zpz_sc01287.1.g00110.1.sm.mk   1 MDGFKLLELVGL-EMDLPVIMLSVNGETKSVMKGITHGACDYLLKPVRIEELRN 53 
                                   788888876644.569************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.0E-18184No hitNo description
PfamPF000721.8E-7154IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011021.72159IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.15E-13171IPR011006CheY-like superfamily
CDDcd001561.49E-10158No hitNo description
Gene3DG3DSA:1.10.10.602.9E-9129155IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MDGFKLLELV GLEMDLPVIM LSVNGETKSV MKGITHGACD YLLKPVRIEE LRNIWQHVVR  60
RKFSSREHKN LDMYKEPPTA DSCNGQSQIV SRASDQSGRL SKKRKELHSE EEDDVDETDF  120
QEGDEPSAAK KPRVVWSVEL HRKFVAAVNQ LGIDSNDS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01287.1.g00110.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964668.17e-85two-component response regulator ORR22
SwissprotB8B3I49e-76ORR22_ORYSI; Two-component response regulator ORR22
SwissprotQ5SML59e-76ORR22_ORYSJ; Two-component response regulator ORR22
TrEMBLA0A0A9B7751e-87A0A0A9B775_ARUDO; Two-component response regulator
STRINGPavir.Da02067.1.p4e-85(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.12e-45response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]