PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01280.1.g00120.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 219aa MW: 23724.9 Da PI: 6.1545 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.4 | 8.9e-10 | 5 | 34 | 1 | 30 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 +++WT+eE++ l ++v ++G g W+tI + Zpz_sc01280.1.g00120.1.sm.mkhc 5 KQKWTQEEEDALRRGVVKHGAGKWRTIQKD 34 79*************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.252 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.81E-11 | 2 | 51 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.0E-7 | 5 | 33 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-11 | 5 | 51 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 5.14E-16 | 6 | 51 | No hit | No description |
Gene3D | G3DSA:1.10.10.10 | 2.7E-6 | 76 | 121 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.99E-5 | 80 | 119 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MGAPKQKWTQ EEEDALRRGV VKHGAGKWRT IQKDPEFSPT LSSRSNIDLK DLLLPAPNKI 60 AEASAPADAE KKPLDAKNSA NTMILEALSE LNEPNGSDVS AIQGFIEVDN KYFKLTDSFA 120 TKTPALVKAS TQKPKDPSSK PLKTSKNLGP GLEAASAAAA KAADAEAKAH LAHEHMMEAE 180 RILKMAEETE SLLFLAAEIY DRCSKGEIIT VNPVSQKEF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01280.1.g00120.1.sm.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375619 | 1e-45 | AK375619.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3099J10. | |||
GenBank | FP094524 | 1e-45 | FP094524.1 Phyllostachys edulis cDNA clone: bphylf024j07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105225.1 | 8e-85 | single myb histone 3 | ||||
Swissprot | Q6WLH4 | 7e-86 | SMH3_MAIZE; Single myb histone 3 | ||||
TrEMBL | A0A0A9PJS4 | 2e-89 | A0A0A9PJS4_ARUDO; Smh4 | ||||
STRING | Pavir.Eb02802.1.p | 2e-80 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9247 | 34 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 4e-24 | telomere repeat binding factor 1 |
Publications ? help Back to Top | |||
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