PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01264.1.g00180.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 274aa    MW: 29125.6 Da    PI: 7.5052
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01264.1.g00180.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP89.95.5e-2854124373
                           TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 
                                   g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WL+ + +++i++l+ ++++++++ 
  Zpz_sc01264.1.g00180.1.am.mk  54 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLIDATQHEIDKLPPLQFPQQHAQ 124
                                   78*************************************************************77776333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.5E-2655119IPR005333Transcription factor, TCP
PROSITE profilePS5136928.59655113IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MISGNHTNEE LAGCRKAEQP AVVDAGAAKS AAASSRPWPP STESRIVRVS RVFGGKDRHS  60
KVRTVKGLRD RRVRLSVPTA IQLYDLQDRL GLSQPSKVVD WLIDATQHEI DKLPPLQFPQ  120
QHAQDLVAHL QPTSMLTPFA SAAAEAAAAS SVLDGDKGGI KGLMGLNNSV SLGNGAMPLS  180
HGLHFAGESW TNGGSVHDQV SHGNSPQPTV AHHSPFSSLL SLAPGPQLVF YSPEGGGFTM  240
KEASDQFPVD NLEHWQGQLS LNSARSFLHS GSQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2060114155Putative transcription factor PCF6
5zkt_B1e-2060114155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01264.1.g00180.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0366941e-113BT036694.1 Zea mays full-length cDNA clone ZM_BFb0132C18 mRNA, complete cds.
GenBankBT0689421e-113BT068942.2 Zea mays full-length cDNA clone ZM_BFc0170I14 mRNA, complete cds.
GenBankBT0692791e-113BT069279.2 Zea mays full-length cDNA clone ZM_BFc0043P12 mRNA, complete cds.
GenBankEU9678771e-113EU967877.1 Zea mays clone 306784 hypothetical protein mRNA, complete cds.
GenBankKJ7268261e-113KJ726826.1 Zea mays clone pUT3365 TCP transcription factor (TCP7) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961521.11e-136transcription factor TCP13 isoform X1
RefseqXP_004961522.11e-136transcription factor TCP13 isoform X1
RefseqXP_012700333.11e-136transcription factor TCP13 isoform X1
TrEMBLK3Z8G31e-135K3Z8G3_SETIT; Uncharacterized protein
STRINGSi022830m1e-136(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-40TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5