PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01264.1.g00170.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | TCP | ||||||||
Protein Properties | Length: 212aa MW: 22395 Da PI: 6.1549 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 53 | 1.3e-16 | 11 | 63 | 22 | 77 |
TCP 22 vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaes 77 vRls+++a++++dLqd+LG+ ++sk ++WL+ + +++i++l+ ++++++++ + Zpz_sc01264.1.g00170.1.sm.mk 11 VRLSVPTAIQLYDLQDRLGLSQPSKVVDWLIDATQHEIDKLPPQQFPPQHAQ---D 63 8*******************************************99998443...2 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 17.888 | 1 | 51 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.3E-12 | 11 | 65 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MLLERATRPA VRLSVPTAIQ LYDLQDRLGL SQPSKVVDWL IDATQHEIDK LPPQQFPPQH 60 AQDLVAHLQP TSMLTPFASA AAAATAASSV LDGDKGGIKG LMGLNNSVGL GNGAMSLAHG 120 LYFTGESWTN GGSVHDQVSH GNSPQPTVAH HSPFSSLLSL SPGPQLVFYS PEGGGFAVKE 180 ASDQFPVDNL EHWQGQLSLN SARSFLHSGS QG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01264.1.g00170.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036694 | 1e-66 | BT036694.1 Zea mays full-length cDNA clone ZM_BFb0132C18 mRNA, complete cds. | |||
GenBank | BT068942 | 1e-66 | BT068942.2 Zea mays full-length cDNA clone ZM_BFc0170I14 mRNA, complete cds. | |||
GenBank | BT069279 | 1e-66 | BT069279.2 Zea mays full-length cDNA clone ZM_BFc0043P12 mRNA, complete cds. | |||
GenBank | EU967877 | 1e-66 | EU967877.1 Zea mays clone 306784 hypothetical protein mRNA, complete cds. | |||
GenBank | KJ726826 | 1e-66 | KJ726826.1 Zea mays clone pUT3365 TCP transcription factor (TCP7) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961521.1 | 3e-99 | transcription factor TCP13 isoform X1 | ||||
Refseq | XP_004961522.1 | 3e-99 | transcription factor TCP13 isoform X1 | ||||
Refseq | XP_012700333.1 | 3e-99 | transcription factor TCP13 isoform X1 | ||||
TrEMBL | K3Z8G3 | 7e-98 | K3Z8G3_SETIT; Uncharacterized protein | ||||
STRING | Si022830m | 1e-98 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2490 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 6e-21 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |