PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01253.1.g00220.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 429aa    MW: 46638.4 Da    PI: 6.1311
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01253.1.g00220.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.7e-1760104147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   r +WT+eE+e++++a k++G   W+ I +++g ++t+ q++s+ qk+
  Zpz_sc01253.1.g00220.1.sm.mk  60 REKWTEEEHEKFLEALKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 104
                                   789*****************55.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.43E-1654108IPR009057Homeodomain-like
PROSITE profilePS5129422.05655109IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-1057107IPR009057Homeodomain-like
TIGRFAMsTIGR015576.9E-1658107IPR006447Myb domain, plants
SMARTSM007171.6E-1459107IPR001005SANT/Myb domain
PfamPF002491.1E-1460103IPR001005SANT/Myb domain
CDDcd001671.13E-1162105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009845Biological Processseed germination
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MEVAVAQVEV EERDGADSSC LRRPLDVVKP PVVADAMQPK ERMDGYPVKV RKPYTITKQR  60
EKWTEEEHEK FLEALKLYGR SWRQIQEHIG TKTAVQIRSH AQKFFSKVVR EPGASNVIEI  120
PPPRPKRKPL HPYPRKCADP STVANLKLAP VSPSSGSDQE NGSPVSVLSA VQSDAFGSSI  180
SNLSTGCTSP VSSDDGNNAR VMVNGEEILP SKQAEIDQSP KEIKQDNSDG DLFEEGSLRE  240
TSLKLFGKTV TIPDPVKVCS SDGGRGEGER CTQSACKEIF EASSIGSATT CAAPTGWVLP  300
YHYFPYHMGE SMDPRISAPL HVWWPYYSFP VSQPRELGAV LHGEGTGESD TGKSPSAESS  360
ADSMGNVQTR TPIDCEVAKE SLGAIQTPDS ALCFELKPSV NSAFVPVKPS NTGSQSTRGF  420
VPCKRCKVE
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01253.1.g00220.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966527.10.0uncharacterized protein LOC101785788
TrEMBLA0A3L6S0P20.0A0A3L6S0P2_PANMI; Uncharacterized protein
STRINGSi006457m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77833647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.17e-42MYB_related family protein