PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01241.1.g00250.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 275aa    MW: 28998.7 Da    PI: 9.3229
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01241.1.g00250.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.69.3e-20150184135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C+nC t++TplWR+gp+g+k+LCnaCG++y+k+++
  Zpz_sc01241.1.g00250.1.am.mk 150 CANCDTSSTPLWRNGPRGPKSLCNACGIRYKKEER 184
                                   ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011414.51144180IPR000679Zinc finger, GATA-type
SMARTSM004011.5E-19144196IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.33E-13146186No hitNo description
Gene3DG3DSA:3.30.50.104.6E-17148184IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.34E-11149181No hitNo description
PfamPF003201.5E-17150184IPR000679Zinc finger, GATA-type
PROSITE patternPS003440150175IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MRTQAQLLRS PVDTAPGQPA TRSRSRPCCR AHEHERWEER KWWPVPRTDR APRSRCSRAP  60
RIHSMLQELA PCACGMRDAG GDCGGRCGGP AFSLMFPVTA GGGQLGYGGG PVDCTLSLAT  120
PSTRRAEAGA HAKAGGGSAV ASCKEPARRC ANCDTSSTPL WRNGPRGPKS LCNACGIRYK  180
KEERRAAAAV APAPTQCHGS LGPGSYACGA YARQHQPPPQ WGCYGSAAGT TKSASFAAYG  240
DSAAADGPCL SWMLNGVPSS PAFAVRERPS LFQYY
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01241.1.g00250.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681231.16e-62GATA transcription factor 15
TrEMBLA0A1E5WAB75e-71A0A1E5WAB7_9POAL; Uncharacterized protein
STRINGSi024214m2e-61(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.13e-24GATA transcription factor 19