PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01241.1.g00120.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 849aa    MW: 91422.1 Da    PI: 7.5355
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01241.1.g00120.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.33.3e-33197254259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   +Dgy+WrKYGqK vk+s+fprsYYrCt+++Cpvkk+vers +d  vv++tYeg+H+h+
  Zpz_sc01241.1.g00120.1.am.mk 197 EDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCPVKKRVERSFQDAAVVITTYEGKHTHP 254
                                   8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-34181256IPR003657WRKY domain
SuperFamilySSF1182907.98E-29188256IPR003657WRKY domain
PROSITE profilePS5081131.904191256IPR003657WRKY domain
SMARTSM007744.3E-40196255IPR003657WRKY domain
PfamPF031064.7E-26197254IPR003657WRKY domain
SuperFamilySSF504474.24E-9702779IPR009000Translation protein, beta-barrel domain
Gene3DG3DSA:2.40.30.605.9E-12702778IPR002676RimM protein
PfamPF017821.4E-14705779IPR002676RimM protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006364Biological ProcessrRNA processing
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    Send to blast
MADARRVDHG GSHQRHLSGD FQFHDDLASL FAQRLEAGTP MQQQPWFTDY LQQASTLTPL  60
DFDWFAGEFD MSTAVEEVKR ELAVDGTGAA SGVGMPGGGG GTSTTAPLMQ NSMSLSSTSS  120
EAFGAGGGAG AAEESPGKCK EEEGEGDESK DGSTAKGGGE MDGKNKKGAA KGKGKGEKRP  180
RQPRFAFMTK SEVDHLEDGY RWRKYGQKAV KNSPFPRSYY RCTTQKCPVK KRVERSFQDA  240
AVVITTYEGK HTHPIPPTLR GSARLLAAEH HPGLHHQHFR MPPPPPRPMG GAAGFAYGRP  300
GATALDALGL LQPWPQGHHH AIQVQQVVSG ARGGVQPQVN AAMASNHAGH AVPDQLGLAA  360
IAGTAGAAPA TTAAASNTAP LRVQHFMAQD YAGLLQDIGV NLALPTASNA TATKLESQAP  420
QDLAAVYHPR PAERGSRVLK PSMIHLFIRD SDAVRARVEG SKVIHFFRLQ AMRLRLHGDS  480
KCSRGRPGRR ELIARPCDGG VATSFSGLSG SEREVSSDGG CSVHWARPQR TSSTALEAWK  540
WTGRSSCPAT AWGGLPRFPP ALTVWAGRYG RSNGSVFTAS LSTSPSYPLS SSSDSLTPGG  600
SFPALRMASP ASASTSAPLS LSLPVRITCF RFRLPSSFFG LSCPRVALAP ARPCAALVSG  660
LSDAREQDED QEYYEEDAYE EEYDDDEEAE ELEYDDDEGE FELVEVGYVS GVHGVRGDVL  720
VTPRTDFPEL RFATPGKRWL RARAAGKQKV KGFQLVQGRA HTGKKGWIVS FDGINDLDEE  780
WKDRKRLQRR VIAAKKVLSD MDQGHVLEGS LSGDKVQKAE LGEQIDLQRI QQASDWTSFA  840
VWDSCFTGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-26184257275WRKY transcription factor 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01241.1.g00120.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.11e-46WRKY DNA-binding protein 71