PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01241.1.g00010.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HB-other

Protein Properties

Length: 653aa MW: 69469.4 Da PI: 9.4027

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01241.1.g00010.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.8	5.8e-06	123	138	41	56
HHHHHHHHHHHHHHHH CS Homeobox 41 erqVkvWFqNrRakek 56 +++V++WFqNr+ + k Zpz_sc01241.1.g00010.1.am.mk 123 DANVFYWFQNRKSRTK 138 79************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 653 aa Download sequence Send to blast
STSVVAPITA NKKPSTRPCV RARADELRRL ARSWENRPTF FYIEMEEREN EGKKGTRGSF 60 DRWITGRAAR HWPSMYRSSL ACNIQQPQPD MNNGVGGKSS LMSSSMSLLD TMHPACEYGP 120 VGDANVFYWF QNRKSRTKHK LRAAGQLQPA SGRAGLARAC ASTMPAPAPV TPPRHLLPAP 180 VAPTSSSSSS SDRSSGSSSK SVKPAVALPS SPAAVIQQVG FLPAPAMDFL KQTPPVPCLA 240 ARQLYYHSQI AAPTVPLTPE LITSPDPPLL QWQQSQYLPA TELGGLLGAQ YAPAPVTVHS 300 PVSPNVLLGL GNEILGQDCV NVSSSSKGLL GHDQYWNNTG TELSSKTDAL SAVIRDDERA 360 RLGSLHHDFG VTTTTAAGDP LHAAADAAGT AAMLPSAAAA PINVAAATTS VDLTDQLQGL 420 LDFGLIGRTA PPPMATLVAV ARGAVTTCAS TMQFSVPATR LDMRQFGKAA VLLRHPGEPV 480 LVDESGVTVE PLQQDGLYYV LVKISLQFIG LFRELAALLR RPAGRPGTPF GLSCHSVQGL 540 HRPDQRDPSP VSALPFVFSI ARTADAQGIA IHRLHDHEST TLACAVTAGH EGDGRVGAPR 600 PHPSPICPER GSNAARDQLI TPVDLLVIFK LRLIPPPLRR AVCICVRARR LGL

Sequence ? help Back to Top

Protein Sequence Length: 653 aa Download sequence Send to blast

STSVVAPITA NKKPSTRPCV RARADELRRL ARSWENRPTF FYIEMEEREN EGKKGTRGSF  60
DRWITGRAAR HWPSMYRSSL ACNIQQPQPD MNNGVGGKSS LMSSSMSLLD TMHPACEYGP  120
VGDANVFYWF QNRKSRTKHK LRAAGQLQPA SGRAGLARAC ASTMPAPAPV TPPRHLLPAP  180
VAPTSSSSSS SDRSSGSSSK SVKPAVALPS SPAAVIQQVG FLPAPAMDFL KQTPPVPCLA  240
ARQLYYHSQI AAPTVPLTPE LITSPDPPLL QWQQSQYLPA TELGGLLGAQ YAPAPVTVHS  300
PVSPNVLLGL GNEILGQDCV NVSSSSKGLL GHDQYWNNTG TELSSKTDAL SAVIRDDERA  360
RLGSLHHDFG VTTTTAAGDP LHAAADAAGT AAMLPSAAAA PINVAAATTS VDLTDQLQGL  420
LDFGLIGRTA PPPMATLVAV ARGAVTTCAS TMQFSVPATR LDMRQFGKAA VLLRHPGEPV  480
LVDESGVTVE PLQQDGLYYV LVKISLQFIG LFRELAALLR RPAGRPGTPF GLSCHSVQGL  540
HRPDQRDPSP VSALPFVFSI ARTADAQGIA IHRLHDHEST TLACAVTAGH EGDGRVGAPR  600
PHPSPICPER GSNAARDQLI TPVDLLVIFK LRLIPPPLRR AVCICVRARR LGL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01241.1.g00010.1.am.mk

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM490242	6e-37	AM490242.1 Zea mays mRNA for putative wuschel homeobox protein (wox9C gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961209.1	1e-140	WUSCHEL-related homeobox 12
Swissprot	A3B6V0	5e-84	WOX12_ORYSJ; WUSCHEL-related homeobox 12
TrEMBL	K3ZEL7	1e-138	K3ZEL7_SETIT; Uncharacterized protein
STRING	Si025013m	1e-139	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2666	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	2e-10	homeobox-3

Publications ? help Back to Top
Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]