PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01237.1.g00150.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Nin-like

Protein Properties

Length: 379aa MW: 42060 Da PI: 10.55

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01237.1.g00150.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	62.1	9.4e-20	103	144	9	50
RWP-RK 9 dlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 +++++F+l ikdAA eLg+c++++K iCR++G++RWP Rk++ Zpz_sc01237.1.g00150.1.am.mk 103 EIRACFHLRIKDAAAELGICQSTIKGICRKHGVPRWPGRKVR 144 799*************************************96 PP
2	RWP-RK	26.5	1.2e-08	268	300	14	46
RWP-RK 14 FslpikdAAkeLgvclTvLKriCRqyGIkRWPh 46 +l ++dAA Lg+++ LK CR +G++RW Zpz_sc01237.1.g00150.1.am.mk 268 LHLRLNDAAAALGISTDRLKFVCRSNGLRRWTG 300 6999***************************65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.345	82	166	IPR003035	RWP-RK domain
Pfam	PF02042	2.0E-17	103	144	IPR003035	RWP-RK domain
PROSITE profile	PS51519	10.569	246	326	IPR003035	RWP-RK domain
Pfam	PF02042	3.1E-7	266	298	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MAAGFVGGLA AGVDGGCWGV AAACMCWWQM GVLVVTVGGE CDLKSSRHLH FIYTDSTCRC 60 TKSPTREEKK DLMKHLLVAV DSDQLAMAPG GKKRTMDEPE WPEIRACFHL RIKDAAAELG 120 ICQSTIKGIC RKHGVPRWPG RKVRFMLGQL GKLAIEARAR QGAAPGEEGG HRRREMIAMD 180 ISKVLEEVAR VLQLLPSSDA NPTTKIILTA EDRDCGSVLF KGLQDWRRWS VTWPPPSTEK 240 KATLVLVVFT MPRRRAASPP WSEVLGVLHL RLNDAAAALG ISTDRLKFVC RSNGLRRWTG 300 MTIRSLNAKL RRLIQVAAVA KADALPWWQA PHRRRLGTIT REARRVIHDL DGIYERFRNL 360 APLPQRASDG TLNLIDNVG

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MAAGFVGGLA AGVDGGCWGV AAACMCWWQM GVLVVTVGGE CDLKSSRHLH FIYTDSTCRC  60
TKSPTREEKK DLMKHLLVAV DSDQLAMAPG GKKRTMDEPE WPEIRACFHL RIKDAAAELG  120
ICQSTIKGIC RKHGVPRWPG RKVRFMLGQL GKLAIEARAR QGAAPGEEGG HRRREMIAMD  180
ISKVLEEVAR VLQLLPSSDA NPTTKIILTA EDRDCGSVLF KGLQDWRRWS VTWPPPSTEK  240
KATLVLVVFT MPRRRAASPP WSEVLGVLHL RLNDAAAALG ISTDRLKFVC RSNGLRRWTG  300
MTIRSLNAKL RRLIQVAAVA KADALPWWQA PHRRRLGTIT REARRVIHDL DGIYERFRNL  360
APLPQRASDG TLNLIDNVG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01237.1.g00150.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP47124	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	5e-11	Nin-like family protein