PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01236.1.g00140.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 373aa    MW: 39654.7 Da    PI: 8.4175
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01236.1.g00140.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-20147196255
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                     +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a+++a+++++g
  Zpz_sc01236.1.g00140.1.sm.mkhc 147 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAIAYDEAALRFKG 196
                                     7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.9E-33146205IPR001471AP2/ERF domain
CDDcd000183.54E-30147205No hitNo description
SMARTSM003804.8E-38147210IPR001471AP2/ERF domain
PfamPF008471.8E-13147196IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-22147205IPR016177DNA-binding domain
PROSITE profilePS5103224.711147204IPR001471AP2/ERF domain
PRINTSPR003671.8E-11148159IPR001471AP2/ERF domain
PRINTSPR003671.8E-11170186IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MPGRRRIDPS SCSDVGRRRD RPLPANEEEE EDQPRPQAAA KHELQEEEYP AVQHGGSSTF  60
SGGGSSSSVF VPHGAGAPST PEAYAQYYYS ARADQDASAV ASALAHVIRA SPDQLNPPQG  120
FYSPAEAPQH PGQTAAAGDE EQGRRRHYRG VRQRPWGKWA AEIRDPKKAA RVWLGTFDTA  180
EDAAIAYDEA ALRFKGTKAK LNFPERVQGR TDLGFLVTSG IPDRRGHPSP AAGVTLAMPP  240
PQHHQQLQHY QQTVVPYPDI MQYAQLLQGG RGRGGAHQQQ QAQFMVMGAG ARGGGFNLPF  300
GVAVSPPSSS AAQILDFSTQ QLIRPGPPPS PAAAMSTSSA GAPSTPSSSS ATMASSPSGS  360
SWPYGGEQKN KDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-26146208467ATERF1
3gcc_A2e-26146208467ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01236.1.g00140.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570621e-101EU957062.1 Zea mays clone 1581709 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825288.11e-105uncharacterized protein LOC112900671
TrEMBLA0A3L6PS871e-110A0A3L6PS87_PANMI; AT-rich interactive domain-containing protein 1A-like isoform X1
STRINGSi010289m1e-99(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.15e-26ERF family protein