PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01236.1.g00050.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 263aa MW: 27632 Da PI: 4.3522 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.8 | 1.3e-18 | 34 | 85 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y GVr+++ +gr++AeIrdp + + r++lg+f+taeeAa a+++a+++l+g+ Zpz_sc01236.1.g00050.1.sm.mk 34 TRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARSLRGA 85 5799******.**********843...4*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.73E-28 | 34 | 93 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.8E-29 | 35 | 92 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.1E-11 | 35 | 84 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-32 | 35 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.86E-21 | 35 | 92 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.562 | 35 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-8 | 36 | 47 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-8 | 58 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MNFSSYFFSS SSDKKPSSKR RQQQQPSAPD ANTTRYLGVR RRPWGRYAAE IRDPATKERH 60 WLGTFDTAEE AAVAYDRAAR SLRGARARTN FAYPDLPPGS SITPYLSPDL TSGDVNSAQL 120 LQPFYADPAA AAAALPNPAA NGAVKDDYEY GYGAYGDADM ASLMDDIAFP DDLSAMGGDS 180 GSSMMDMSSA YGSGGGASAG AGGGWCDASE LGGYGASTTT ASGAHGVYFE EGYVHSPLFS 240 PMPAVDDACA DGFQLGGSSS YYY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-18 | 31 | 91 | 1 | 62 | ATERF1 |
3gcc_A | 5e-18 | 31 | 91 | 1 | 62 | ATERF1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01236.1.g00050.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727670 | 1e-108 | KJ727670.1 Zea mays clone pUT5597 AP2-EREBP transcription factor (EREB91) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975472.1 | 1e-111 | ethylene-responsive transcription factor LEP | ||||
TrEMBL | K3YEC4 | 1e-109 | K3YEC4_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Gb01913.1.p | 1e-119 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1885 | 33 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 5e-24 | ERF family protein |