PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01229.1.g00050.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | TCP | ||||||||
Protein Properties | Length: 537aa MW: 55689.8 Da PI: 6.8031 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 109.9 | 3.7e-34 | 183 | 277 | 2 | 82 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............sss 68 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+ l + + Zpz_sc01229.1.g00050.1.sm.mk 183 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKEAIDRLEVLpawqptatatnaaaAAA 263 79**************************************************************66554443333222111 PP TCP 69 saseceaesssssa 82 ++s++ ++s ++s+ Zpz_sc01229.1.g00050.1.sm.mk 264 PSSSTHPDSAENSD 277 11111111111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.2E-31 | 183 | 280 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.211 | 185 | 243 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 537 aa Download sequence Send to blast |
MRIAKVAAAA VAAANQAGDL DPRHQHRVAH GGDGAGGGGG EADEQQQQQH QRLLQLHQEG 60 QDQEPPSVPV FQLQHMQAAA LRQPASSAEY ALLAPMGDAG QSHHHHHGFQ PQLLSFGGVG 120 QHHQLHQFTA QAPAAGSASH SRSRAAAAGG GGGGEIVPAS QSRVRSGGGE IVAVQGGHIV 180 RSTGRKDRHS KVCTARGPRD RRVRLSAHTA IQFYDVQDRL GYDRPSKAVD WLIKNAKEAI 240 DRLEVLPAWQ PTATATNAAA AAAPSSSTHP DSAENSDDQA QAITVAHTGF DFPSGAAGAS 300 GGGGTGFLPS SLDSDSIADT IKSFFPMGGT GGGEASSSTA GAQSSAMSFQ SYTPDLLSRT 360 GGHSQELRLS LQSLPDPPMF QHQHPQPEHD RSHGHGSSQQ ALFPGAGSYS FGGGAMWGAE 420 PAQSQRLVPW NVPDPGGGYL FNVSQQAAHM QAALGGQSQF LFQRGPLQSS NQPSDRGWPE 480 TVEADNPMSA IGFAPGVGFS GFRIPARMQG EEEHNGGGGG SGEKPPPPPS VSSASHH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-20 | 190 | 243 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 3e-20 | 190 | 243 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01229.1.g00050.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU955708 | 0.0 | EU955708.1 Zea mays clone 1543050 mutant cincinnata mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021310872.1 | 0.0 | transcription factor PCF5 | ||||
Refseq | XP_021310873.1 | 0.0 | transcription factor PCF5 | ||||
Swissprot | A2WM14 | 0.0 | PCF5_ORYSI; Transcription factor PCF5 | ||||
TrEMBL | A0A3L6R0N0 | 0.0 | A0A3L6R0N0_PANMI; Uncharacterized protein | ||||
STRING | AC205574.3_FGP006 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5839 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 1e-64 | TCP family protein |