PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01225.1.g00180.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 508aa    MW: 55665.1 Da    PI: 6.6291
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01225.1.g00180.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS324.22.6e-99475001374
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 
                                   l++lL++cA  v++g + +a+ +L+++ +las d+  +++Rlaa+f+ ALa++l++ v++l++al +s++++ +   + aa
  Zpz_sc01225.1.g00180.1.am.mk  47 LIHLLYQCAGQVAAGAFDNANFYLEQITQLASLDApLTLHRLAAVFADALARKLLNLVPGLSRALMTSTADSAEAHLVPAA 127
                                   689********************************89*****************************999999999999999 PP

                          GRAS  81 lklfsevsPilkfshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeele 159
                                   ++ +++  P+lk+++l++N+aI ea+ege+ vH++D++  + +++QW+aL++ +  R+eg+p+lRiT+v+s    ske l 
  Zpz_sc01225.1.g00180.1.am.mk 128 RQHLFDKLPFLKLAYLATNRAIFEAMEGERFVHVVDLSgpMANPVQWIALFHLFCGRREGAPHLRITAVHS----SKEFLA 204
                                   999**********************************866899****************************....9***** PP

                          GRAS 160 etgerLakfAeelgvpfefnvlvakrledleleeL....rvkpgEalaVnlvlqlhrll...................... 214
                                   +++  L+k Ae++++pf+f+  v+++l++l++++L     v++gEala+++v qlhrll                      
  Zpz_sc01225.1.g00180.1.am.mk 205 NMAGILTKEAEAFDIPFQFSE-VESSLDELDIDALhqvlGVRSGEALAISVVAQLHRLLaaddaskrhggsssltplqfia 284
                                   *********************.7999****9999855557888************************************** PP

                          GRAS 215 ..........................................desvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                                                                             + +++ + +  +++++vk lsPk++vv+e ea+hn++ F
  Zpz_sc01225.1.g00180.1.am.mk 285 rssprsfgellerelntrlqlspdsssvlsslspqspgsglaAAQHQRSAKLGKFMSAVKALSPKIMVVTELEANHNAAAF 365
                                   *****************************************9555555556888*************************** PP

                          GRAS 254 lerflealeyysalfdsleak..........lpres..eerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                                    erf ea++yy++lfd+le            +++++   er+  E  +lg+ei+ vva egaer+erhe+l++W +r++ a
  Zpz_sc01225.1.g00180.1.am.mk 366 QERFDEAVNYYASLFDCLEHAsaaaaqqrhhYHHDAvaAERVRAESLVLGEEIRGVVAREGAERKERHERLAQWARRMDCA 446
                                   ******************6665777777776333336699***************************************** PP

                          GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveee..sgslvlgWkdrpLvsvSaWr 374
                                   G++ v+ls+ ++++a+ ll  +++ gy v ++   + l++ W+++pL+s+SaWr
  Zpz_sc01225.1.g00180.1.am.mk 447 GMERVELSYIVMMEARKLLLSCGWGGYDVTQDarGDGLFFWWHRKPLYSISAWR 500
                                   *****************************9764478899**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.44821478IPR005202Transcription factor GRAS
PfamPF035148.9E-9747500IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MLSEDMASST ATSSPASSLY TPSPHGYGCG YGSWVQELTS DNEGVRLIHL LYQCAGQVAA  60
GAFDNANFYL EQITQLASLD APLTLHRLAA VFADALARKL LNLVPGLSRA LMTSTADSAE  120
AHLVPAARQH LFDKLPFLKL AYLATNRAIF EAMEGERFVH VVDLSGPMAN PVQWIALFHL  180
FCGRREGAPH LRITAVHSSK EFLANMAGIL TKEAEAFDIP FQFSEVESSL DELDIDALHQ  240
VLGVRSGEAL AISVVAQLHR LLAADDASKR HGGSSSLTPL QFIARSSPRS FGELLERELN  300
TRLQLSPDSS SVLSSLSPQS PGSGLAAAQH QRSAKLGKFM SAVKALSPKI MVVTELEANH  360
NAAAFQERFD EAVNYYASLF DCLEHASAAA AQQRHHYHHD AVAAERVRAE SLVLGEEIRG  420
VVAREGAERK ERHERLAQWA RRMDCAGMER VELSYIVMME ARKLLLSCGW GGYDVTQDAR  480
GDGLFFWWHR KPLYSISAWR PAASRLSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-22352527217Protein SCARECROW
5b3h_A3e-22352526216Protein SCARECROW
5b3h_D3e-22352526216Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01225.1.g00180.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703080.10.0scarecrow-like protein 3
TrEMBLK3Y6U20.0K3Y6U2_SETIT; Uncharacterized protein
STRINGSi009933m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-109scarecrow-like 3