PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01220.1.g00200.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 125aa    MW: 13483.7 Da    PI: 4.7027
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01220.1.g00200.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.7e-081552338
                                  SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlk 38
                                  +W++eEd+ +  a  +++ +   +W+ Ia+ ++ gRt+ 
  Zpz_sc01220.1.g00200.1.sm.mk 15 PWSKEEDKVFESALVLWPDHtpdRWAMIAAQLP-GRTPT 52
                                  8*****************99*************.***86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177.6E-51264IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-71459IPR009057Homeodomain-like
SuperFamilySSF466896.13E-121467IPR009057Homeodomain-like
CDDcd001676.15E-61553No hitNo description
PROSITE profilePS500907.0971562IPR017877Myb-like domain
PfamPF002493.1E-61553IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MEFHHHAGAA AAGRPWSKEE DKVFESALVL WPDHTPDRWA MIAAQLPGRT PTEAWEHYEA  60
LVADVDLIER GAVDVPGCWD AADDGGGGSE ESGPGRRAGS GRARGESRRP GIPWSEEEHR  120
CGASS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-18777272RADIALIS
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01220.1.g00200.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456680.13e-52transcription factor DIVARICATA
TrEMBLC5XQK57e-51C5XQK5_SORBI; Uncharacterized protein
STRINGSb03g040730.11e-51(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28953687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.12e-15MYB family protein