PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01220.1.g00200.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 125aa MW: 13483.7 Da PI: 4.7027 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.3 | 3.7e-08 | 15 | 52 | 3 | 38 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlk 38 +W++eEd+ + a +++ + +W+ Ia+ ++ gRt+ Zpz_sc01220.1.g00200.1.sm.mk 15 PWSKEEDKVFESALVLWPDHtpdRWAMIAAQLP-GRTPT 52 8*****************99*************.***86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 7.6E-5 | 12 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-7 | 14 | 59 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.13E-12 | 14 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.15E-6 | 15 | 53 | No hit | No description |
PROSITE profile | PS50090 | 7.097 | 15 | 62 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 3.1E-6 | 15 | 53 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MEFHHHAGAA AAGRPWSKEE DKVFESALVL WPDHTPDRWA MIAAQLPGRT PTEAWEHYEA 60 LVADVDLIER GAVDVPGCWD AADDGGGGSE ESGPGRRAGS GRARGESRRP GIPWSEEEHR 120 CGASS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-18 | 7 | 77 | 2 | 72 | RADIALIS |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01220.1.g00200.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002456680.1 | 3e-52 | transcription factor DIVARICATA | ||||
TrEMBL | C5XQK5 | 7e-51 | C5XQK5_SORBI; Uncharacterized protein | ||||
STRING | Sb03g040730.1 | 1e-51 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2895 | 36 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 2e-15 | MYB family protein |