PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01202.1.g00190.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 311aa MW: 34539.8 Da PI: 9.6962

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01202.1.g00190.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.8	1.4e-14	56	100	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++l+++ k++G W++I +++g +t+ q++s+ qk+ Zpz_sc01202.1.g00190.1.sm.mkhc 56 REKWTEDEHKLFLESLKLHGRA-WRRIQEHIG-SKTAVQIRSHAQKF 100 789***************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.42E-14	50	105	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.272	51	105	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-8	53	103	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.5E-14	54	103	IPR006447	Myb domain, plants
SMART	SM00717	5.5E-12	55	103	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-12	56	99	IPR001005	SANT/Myb domain
CDD	cd00167	1.27E-9	58	101	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MARFQEFEVR NDQIAAGGDV GHEDHLKDPL NSGVVDLPDE ERVPKARKPY TISKQREKWT 60 EDEHKLFLES LKLHGRAWRR IQEHIGSKTA VQIRSHAQKF FSKVTRESTA DGNGVVAAPR 120 IRIPPPRPKR KPTHPYPRKL GNSPGKGDPY RKQLDKPQLQ VVPSSYEQEN DSPKSVLTRA 180 QVVRSPASSV GAEDRCSAQR IAAVEVATQV PPYKVYNGDS VSKHSNCGIP ESPVLRLFGK 240 RVVVNGLHQQ PTLDPGNQQN VADMELDATA ETSATGTEKL SSCGAAEANT LSPYPTDKHQ 300 FMYYLPQGKL Q

Functional Description ? help Back to Top
Source	Description
UniProt	Morning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01202.1.g00190.1.sm.mkhc

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824173.1	1e-115	uncharacterized protein LOC112899782
Swissprot	F4KGY6	2e-39	RVE1_ARATH; Protein REVEILLE 1
TrEMBL	A0A2S3I9P7	1e-114	A0A2S3I9P7_9POAL; Uncharacterized protein
STRING	OGLUM04G22920.1	1e-114	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2722	36	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18330.1	5e-34	MYB_related family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xu G, et al. REVEILLE1 promotes NADPH: protochlorophyllide oxidoreductase A expression and seedling greening in Arabidopsis. Photosyn. Res., 2015. 126(2-3): p. 331-40 [PMID:25910753] Jiang Z,Xu G,Jing Y,Tang W,Lin R Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis. Nat Commun, 2016. 7: p. 12377 [PMID:27506149]