PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01168.1.g00090.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 542aa    MW: 59346.8 Da    PI: 6.1117
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01168.1.g00090.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS302.41.1e-921495392373
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaa 80 
                                   ++lL++cA+a++++d++l+q++L+ l+++a pdgd++qRl+a f+  L +r +    ++ + +a++   +s   ++++++a
  Zpz_sc01168.1.g00090.1.am.mk 149 EQLLVHCANAIEANDATLTQQILWVLNNIAPPDGDSNQRLTAAFLCSLITRASLtgACKAVTAAVADAVESAALHVHRFTA 229
                                   79**********************************************888654115566665554444444447777777 PP

                          GRAS  81 lkl..fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....sk 155
                                   ++l  f +++P+++f++ +aN  Ileaveg   vHi+D++ ++++Q p+L++ LasR+egpp lR+T+ + +++       
  Zpz_sc01168.1.g00090.1.am.mk 230 VELasFIDLTPWHRFGYTAANASILEAVEGFPIVHIVDLSTTHCMQIPTLIDMLASRAEGPPILRLTVADVASNApppaLD 310
                                   77789***************************************************************9998888887777 PP

                          GRAS 156 eeleetgerLakfAeelgvpfefnvl.......vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles......e 223
                                    ++ ++ge+L +fA++ +++++f+v+        ++ +++l++++L  +  Eal+Vn+++ lh+++de++ + s       
  Zpz_sc01168.1.g00090.1.am.mk 311 MSYDHLGEKLVNFAQSRNMSLHFQVVptspadaFTSLVDQLRVQQLVSDGTEALVVNCHMLLHTVPDETAGSVSlaqpvsL 391
                                   78899*********************888666555566777888887777****************998777666657777 PP

                          GRAS 224 rdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304
                                   r+ +Lk +++l+P +vvvve++ad ++++ + r+ +a+++++  fd++++ lp+ se+r+++E+e ++++++nv+a+eg e
  Zpz_sc01168.1.g00090.1.am.mk 392 RTMLLKSIRTLEPSLVVVVEEDADFTAGDVVGRLRSAFNFMWIPFDAVDTFLPNGSEQRRWYEAE-VRWKVENVLAQEGVE 471
                                   999**************************************************************.9************** PP

                          GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                   r+er+e  ++W +r+++aGF++v+++e+aa ++k++l++++  g+ ++ e++ lvl+Wk++++v++SaW
  Zpz_sc01168.1.g00090.1.am.mk 472 RVERQEDRARWVQRMRSAGFRTVAFNEEAAGEVKAMLNEHA-AGWGMKREDDDLVLTWKGHNVVFASAW 539
                                   *****************************************.889999********************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.082122521IPR005202Transcription factor GRAS
PfamPF035143.8E-90149539IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MHRSDGSNQG AHTDNQTTPL QLLSHQLRIP SACRHAFGLL MSGAYPPAGE RLADALRHMQ  60
HPSRVHGAPH ILPLNVYKLC LLPVFESSPQ PCWFVSFSLA TCLGPYMMQF MHTMPPPTPL  120
LSNNGHGLGV PTPSSKISLG NLNSTSCMEQ LLVHCANAIE ANDATLTQQI LWVLNNIAPP  180
DGDSNQRLTA AFLCSLITRA SLTGACKAVT AAVADAVESA ALHVHRFTAV ELASFIDLTP  240
WHRFGYTAAN ASILEAVEGF PIVHIVDLST THCMQIPTLI DMLASRAEGP PILRLTVADV  300
ASNAPPPALD MSYDHLGEKL VNFAQSRNMS LHFQVVPTSP ADAFTSLVDQ LRVQQLVSDG  360
TEALVVNCHM LLHTVPDETA GSVSLAQPVS LRTMLLKSIR TLEPSLVVVV EEDADFTAGD  420
VVGRLRSAFN FMWIPFDAVD TFLPNGSEQR RWYEAEVRWK VENVLAQEGV ERVERQEDRA  480
RWVQRMRSAG FRTVAFNEEA AGEVKAMLNE HAAGWGMKRE DDDLVLTWKG HNVVFASAWA  540
PL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B7e-5014954188474Protein SHORT-ROOT
5b3h_B2e-5014954134420Protein SHORT-ROOT
5b3h_E2e-5014954134420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01168.1.g00090.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432380.0AC243238.1 Panicum virgatum clone PV_ABa020-K10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460950.10.0scarecrow-like protein 32
SwissprotQ9SN221e-162SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A1E5V0370.0A0A1E5V037_9POAL; Scarecrow-like protein 32
STRINGSb02g038040.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56973759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-162GRAS family protein