PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01164.1.g00250.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | SBP | ||||||||
Protein Properties | Length: 220aa MW: 23792.9 Da PI: 10.3632 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 79.6 | 4.4e-25 | 71 | 119 | 2 | 50 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEE CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfh 50 C vegC+adls++++yhrrhkvCe+hsk+pvv+v+g++qrfCqqCsr+ Zpz_sc01164.1.g00250.1.am.mk 71 CAVEGCAADLSKCRDYHRRHKVCEAHSKTPVVIVAGQQQRFCQQCSRYA 119 ***********************************************95 PP | |||||||
2 | SBP | 43.3 | 9.6e-14 | 191 | 219 | 47 | 75 |
SSEEETTT--SS--S-STTTT-------S CS SBP 47 srfhelsefDeekrsCrrrLakhnerrrk 75 s fh l efDe krsCr+rL++hn+rrrk Zpz_sc01164.1.g00250.1.am.mk 191 SSFHLLGEFDEIKRSCRKRLDGHNRRRRK 219 89**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.1E-25 | 63 | 118 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 18.973 | 68 | 150 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.31E-23 | 69 | 119 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.4E-17 | 71 | 118 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 10.545 | 142 | 220 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 8.7E-4 | 190 | 207 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.14E-10 | 191 | 219 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.3E-7 | 191 | 219 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MDWDAKMPSW DLGTVVGPSS GNGGGGGGTL DLKLGRPTSW KAAAPLPPPP SSSAPAKRPR 60 SGRAQQAVPA CAVEGCAADL SKCRDYHRRH KVCEAHSKTP VVIVAGQQQR FCQQCSRYAR 120 TLTGPEETLV ELAASTRARA SWASPQQRND AAGAVELDSW VDASGRFQGS RGQQIQLCSP 180 MCVRVSLSSL SSFHLLGEFD EIKRSCRKRL DGHNRRRRKV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj0_A | 1e-17 | 71 | 118 | 6 | 53 | squamosa promoter-binding protein-like 12 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01164.1.g00250.1.am.mk |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006167 | 2e-63 | AP006167.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1455F06. | |||
GenBank | AP012918 | 2e-63 | AP012918.1 Oryza sativa Indica Group DNA, chromosome 1, BAC clone: K0158A04, cultivar: Kasalath, complete sequence. | |||
GenBank | AP014957 | 2e-63 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 2e-63 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. | |||
GenBank | CT829115 | 2e-63 | CT829115.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA034K08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008674641.1 | 2e-44 | squamosa promoter-binding-like protein 2 | ||||
Swissprot | Q0JGI1 | 5e-42 | SPL2_ORYSJ; Squamosa promoter-binding-like protein 2 | ||||
TrEMBL | A0A3S6H659 | 2e-53 | A0A3S6H659_9POAL; Squamosa-promoter binding protein-like protein | ||||
STRING | GRMZM5G878561_P01 | 3e-55 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10456 | 30 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 5e-21 | SBP family protein |
Publications ? help Back to Top | |||
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