PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01161.1.g00180.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 224aa MW: 25271.7 Da PI: 8.8596 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.9 | 2.5e-18 | 48 | 98 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++ GVr+++ +grWvAeI+d + ++ r +lg+f tae Aaka+++a++ l+g Zpz_sc01161.1.g00180.1.am.mk 48 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEAAAKAYDEAARLLRG 98 79********.7*********32...35***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.24E-16 | 48 | 105 | No hit | No description |
SuperFamily | SSF54171 | 5.3E-19 | 48 | 107 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.1E-12 | 48 | 98 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-27 | 49 | 106 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.836 | 49 | 106 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.8E-34 | 49 | 112 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-7 | 50 | 61 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-7 | 72 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MELHFQLQPP AVSFQVDDYC YYYYQQEAAA QAKPVKPRGR KKGSNHHSKF VGVRQRPSGR 60 WVAEIKDTTQ KIRMWLGTFE TAEAAAKAYD EAARLLRGAD TRTNFTPRIS PDCPLAVRIR 120 GLLHHKKVKK QAKFDSWMFD SAFGQFPALD GFPAAADSSV PTAPALEEPR PAAAPGEMVE 180 FERIKVERRI SASLYAMNGL QEYFDRVFDA SACDSLWDLS PLCH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-12 | 39 | 105 | 5 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the symbiotic nodule signaling pathway in response to rhizobial stimulation. Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation, and nodule development. May coordinate these processes (PubMed:28503742, PubMed:28028038, PubMed:28068194). Functions downstream of the CCAMK-CYCLOPS complex (PubMed:28503742, PubMed:28028038). Probably not involved in arbuscular mycorrhizal (AM) symbiosis (PubMed:28068194). {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28068194, ECO:0000269|PubMed:28503742}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01161.1.g00180.1.am.mk |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced in nodules 7 days after rhizobial inoculation. {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28503742}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727661 | 1e-115 | KJ727661.1 Zea mays clone pUT5588 AP2-EREBP transcription factor (EREB62) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002281619.1 | 5e-60 | PREDICTED: ethylene-responsive transcription factor RAP2-11 | ||||
Refseq | XP_015646240.1 | 1e-59 | ethylene-responsive transcription factor ERN1 | ||||
Swissprot | A0A1X9PY88 | 5e-58 | ERN1_LOTJA; Ethylene-responsive transcription factor ERN1 | ||||
TrEMBL | A0A0D3GSP7 | 1e-68 | A0A0D3GSP7_9ORYZ; Uncharacterized protein | ||||
STRING | OBART07G19610.1 | 2e-69 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3900 | 32 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 2e-26 | related to AP2 11 |
Publications ? help Back to Top | |||
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