PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01142.1.g00160.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family G2-like
Protein Properties Length: 351aa    MW: 37747.4 Da    PI: 8.1392
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01142.1.g00160.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.13.1e-31234289156
                         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                                     k r++W+peLH++Fv a++qLGG+++AtPk+i+elmkv+ Lt+++vkSHLQkYRl+
  Zpz_sc01142.1.g00160.1.sm.mkhc 234 KSRRCWSPELHRQFVAALNQLGGPQVATPKQIRELMKVDELTNDEVKSHLQKYRLH 289
                                     68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.255231291IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-28232292IPR009057Homeodomain-like
SuperFamilySSF466891.04E-16232292IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-25234289IPR006447Myb domain, plants
PfamPF002493.3E-6236287IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGLDVGEIGM GADLSLDLRH FASKAMKQTR SALASDMDAY IRRLEEERGK IEVFRRELPI  60
CARLLADVID VMKEEAEKEK KDDRNEEEEE DGATGDKSRW MSTAQLWTSG SGRDAAEPEK  120
QESDKGRSSS EQNSSGGAFT LFNAVGSLAP ASGLRPRLRK DDDKAVGAGM PDLSLLSPPP  180
ITSVPAAAAV ESRRQVVGLA HAAARAASVG GPALCLQPHA QRTTPPPQQQ QARKSRRCWS  240
PELHRQFVAA LNQLGGPQVA TPKQIRELMK VDELTNDEVK SHLQKYRLHT RRTPSGPAVV  300
SQPIVLVGGL WIPHQEHSHS GSHAQSSGSP QGPLRFSPAS GVAVSSAATA S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A7e-13234287154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-13234287154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-13234287154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-13234287154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01142.1.g00160.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459272.21e-133transcription factor HHO2
TrEMBLA0A0A9H2111e-132A0A0A9H211_ARUDO; Uncharacterized protein
TrEMBLC5X8091e-132C5X809_SORBI; Uncharacterized protein
STRINGSb02g001600.11e-133(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.13e-40G2-like family protein