PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01121.1.g00130.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 326aa    MW: 34944.3 Da    PI: 6.3397
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01121.1.g00130.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.34.3e-191461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT+eEde+l++++++ G g+W+t +r  g++R++k+c++rw +yl
  Zpz_sc01121.1.g00130.1.am.mk 14 KGPWTPEEDEKLLQYIQKNGHGSWRTLPRLAGLNRCGKSCRLRWTNYL 61
                                  79********************************************97 PP
2Myb_DNA-binding53.65.2e-1767112148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++++eE+  +++++  lG++ W++Ia +++ gRt++++k++w+++l
  Zpz_sc01121.1.g00130.1.am.mk  67 RGKFSQEEERTILHLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112
                                   89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-25564IPR009057Homeodomain-like
PROSITE profilePS5129418.7961IPR017930Myb domain
SuperFamilySSF466897.26E-3211108IPR009057Homeodomain-like
SMARTSM007173.4E-151363IPR001005SANT/Myb domain
PfamPF002494.8E-171461IPR001005SANT/Myb domain
CDDcd001674.78E-121661No hitNo description
PROSITE profilePS5129426.60362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-2765117IPR009057Homeodomain-like
SMARTSM007171.2E-1666114IPR001005SANT/Myb domain
PfamPF002496.7E-1667112IPR001005SANT/Myb domain
CDDcd001671.31E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGRPPCCDES GLKKGPWTPE EDEKLLQYIQ KNGHGSWRTL PRLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SQEEERTILH LHSILGNKWS AIATHLPGRT DNEIKNFWNT HLKKRLIQMG  120
LDPMTHRPRT DFFAALPQLI ALAALREQLV AADHPAAGQM QPAGAGAAGV DVAIQAAKLQ  180
YLQCLLQSAA TTIASTAGGR HAPDAEETAL GAFSSSLQGT PPGGSVPVSC TAAAQVSCTT  240
TTTYEEPLSS EFANHGLISY DATDDMLACH GTGSLLPTLT DLADATANPG DRCSATASSS  300
FGDGGASSPL PWPEFFTDDP FITDFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-30121162105MYB PROTO-ONCOGENE PROTEIN
1mse_C8e-31121162105C-Myb DNA-Binding Domain
1msf_C8e-31121162105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00180DAPTransfer from AT1G34670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01121.1.g00130.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283091e-168KJ728309.1 Zea mays clone pUT6589 MYB transcription factor (MYB63) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820029.11e-153transcription factor MYB93-like
SwissprotQ9S9Z22e-96MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A3L6PQU11e-155A0A3L6PQU1_PANMI; Myb-related protein Hv33-like
STRINGPavir.Fa00604.1.p1e-151(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112637132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.12e-85myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]