PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01089.1.g00040.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 472aa    MW: 51922.9 Da    PI: 9.4369
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01089.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-16158205148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
  Zpz_sc01089.1.g00040.1.am.mk 158 KGPWTPEEDVILVSYIQEHGPGNWRAVPVNTGLMRCSKSCRLRWTNYL 205
                                   79********************************************97 PP
2Myb_DNA-binding46.77.3e-15211256148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++T+ E+ ++v++  +lG++ W++Ia++++  Rt++++k++w+++l
  Zpz_sc01089.1.g00040.1.am.mk 211 RGNFTPHEEGIIVHLQSLLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 256
                                   89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-22149208IPR009057Homeodomain-like
PROSITE profilePS5129423.631153209IPR017930Myb domain
SuperFamilySSF466898.58E-30155252IPR009057Homeodomain-like
SMARTSM007175.2E-13157207IPR001005SANT/Myb domain
PfamPF002495.4E-15158205IPR001005SANT/Myb domain
CDDcd001674.38E-11160205No hitNo description
Gene3DG3DSA:1.10.10.602.7E-23209261IPR009057Homeodomain-like
SMARTSM007173.0E-12210258IPR001005SANT/Myb domain
PROSITE profilePS5129418.153210260IPR017930Myb domain
PfamPF002499.8E-13211256IPR001005SANT/Myb domain
CDDcd001671.77E-9213256No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MAHSISYAGT TCSRRKQLAG TIYPSSILPA PSTCGCGPSR RITGANIDQH AHMSDRIDRP  60
YSQYVRNRVF METWSARSPQ ARPGWIPLQS AGHGFGVATT MSCGALEQAS GNRYPSQCRR  120
FKEGTVDRRA GPWIYRSLEK KKKKMGRPPC CDKVGIKKGP WTPEEDVILV SYIQEHGPGN  180
WRAVPVNTGL MRCSKSCRLR WTNYLRPGIR RGNFTPHEEG IIVHLQSLLG NRWAAIASYL  240
PQRTDNDIKN YWNTHLQKKL KKHQAIGAIF APPPPPSDLS SMTIPAAAFT DAGHVDHHRM  300
ITNPLSTYSY APRPTRSNPG DVTQLIARRS SFAAAPGSSL DAESGTSSSS YASSMDNISK  360
LLDGFMKSAT PQNDVAAAQL NPPAAEVNPL LPFESMSGAG REVPPSFADV LPPQPVLMEP  420
RSGHHDDQPK QQQQQAQAPL SSMEKWLLDE AAEQVGDLMD LSDPWCSVPM LF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-241582604105MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-2315626025128MYB TRANSFORMING PROTEIN
1mse_C6e-241582604105C-Myb DNA-Binding Domain
1msf_C6e-241582604105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01089.1.g00040.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3574781e-146AK357478.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1054F12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977433.11e-131transcription factor MYB30
RefseqXP_025827828.11e-131transcription factor MYB30-like
SwissprotB3VTV78e-92MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A1E5VWG11e-140A0A1E5VWG1_9POAL; Myb-related protein 306
STRINGSi010608m1e-130(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.11e-80myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]