PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01088.1.g00170.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 659aa    MW: 71529.5 Da    PI: 7.0755
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01088.1.g00170.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind97.51.4e-303614512101
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl k++e++ed++++ ++sw +  nsfvv+d++ fa ++Lp+ Fkh nf+ F+RQLn+YgF+kv+ ++         weF+
  Zpz_sc01088.1.g00170.1.am.mk 361 FLAKTFELVEDPATDGVVSWGAARNSFVVWDPQAFAARLLPRRFKHANFSTFLRQLNTYGFRKVSADK---------WEFA 432
                                   9********************999******************************************99.........**** PP

                                   ESXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkk 101
                                   h  F +g+++ll +i+r++
  Zpz_sc01088.1.g00170.1.am.mk 433 HADFLAGQRHLLANIRRRR 451
                                   *****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF130411.2E-10136177IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.937137171IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.6E-9139173IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.762172206IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.8E-7174203IPR002885Pentatricopeptide repeat
SMARTSM004154.5E-50357450IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.98E-30358450IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.5E-33358450IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.3E-15361384IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-27361450IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-15399411IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-15412424IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
LRHSSLIASG SSAPSKLFLP TTSASLTPSL PRPMSVSPPT SRPAAAPTYS RSPPASSRSS  60
LASATGPTSP PRSWTSSTKR CSLSGHTCSA LPSILETLLY VLANHDLLDA AVHALAHPAI  120
TVVGLSGNSS TYCLPPNAFT FNIMIDFLCK EGELMEARAM FERMTETCCS PDVVTFNSLI  180
DGYGKCRELE EVEKLVGEMK RSGETEDVRS VPGEQREAPH EGQGGRSRHA PELPSTTRRS  240
RARRRRRRHS TPPWRCTELM SIKSNGHARR EHQRMNLSPA HVSRQAIKPP TYATQRTRRA  300
APGATAFFCS MEKPAAATVK QEQHDDGEVV VLDGDGEGWP RGKAPAPLEA LSSVAPAVAP  360
FLAKTFELVE DPATDGVVSW GAARNSFVVW DPQAFAARLL PRRFKHANFS TFLRQLNTYG  420
FRKVSADKWE FAHADFLAGQ RHLLANIRRR RGAAGSSTSP SSGESGSGHG IGEVERLRRD  480
REALARELAR LQREQQEARA ALLDMERRVR GTERRQEQCT AFLARAVANP GFLDGLLARR  540
DAAAAEGGRK RRLLDAAPPD VAAEVLAFEE MALAAGAEIE VEPAFPAPTA SRSAGGTATD  600
MIWYELLGEE QAEIDIEVEE LLAATTAAEA AAAPWEEMGE EEVQELVQEI DCLGSPTSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-233364504129Heat shock factor protein 1
5d5v_B6e-233364504129Heat shock factor protein 1
5d5v_D6e-233364504129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238247RSRARRRRRR
2475480RLRRDR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01088.1.g00170.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3727016e-83AK372701.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3009M23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001356225.11e-134heat shock factor protein HSF30
TrEMBLB6TKC41e-135B6TKC4_MAIZE; Heat shock factor protein HSF30
STRINGGRMZM2G173090_P011e-133(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-42heat shock transcription factor A2