PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01078.1.g00190.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GATA | ||||||||
Protein Properties | Length: 395aa MW: 43533.5 Da PI: 6.3257 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 46.5 | 5.2e-15 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Zpz_sc01078.1.g00190.1.sm.mkhc 7 CCHCGVTSTPLWRNGPADKPVLCNACGSRWRTKGS 41 99**************77777***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 7.8E-8 | 1 | 53 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 2.71E-14 | 6 | 40 | No hit | No description |
SuperFamily | SSF57716 | 6.18E-11 | 6 | 45 | No hit | No description |
Pfam | PF00320 | 1.5E-12 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.385 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 6.5E-12 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MVKQGPCCHC GVTSTPLWRN GPADKPVLCN ACGSRWRTKG SLANYTPMHR RDDIDDEEPR 60 ASRLRPPTSK PKAQKAKQIT KRTTMENGPF SAQNFRRMGD ADPCNRSSSG SAVSYSESCV 120 PYGAADASEM TGSAQSHAWE SLVPSKKRSC INRPKDSPVE KLAKDLNSIM HEEQFYHLSG 180 SSEDDLLYHS ETPVGSVEIG SGSVLLRNMY SKSLEEESEA SSVPAENKSY VTSESFSGSA 240 SFGVHSGTKE ASNLKSAFER PKMLRLQIED NVRRDALYCE NPHILESADS PLVSIDVEEK 300 EIEETGEEKN ISGLKGITKP AMKPLKRPHD THFQSCAELK YTDNYSDQDL LLDIPVNARH 360 LESELLYQPS QLSSVIHSSN SIGRVAEGEG HLKQP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01078.1.g00190.1.sm.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021307180.1 | 1e-168 | GATA transcription factor 26 | ||||
TrEMBL | I1J090 | 1e-168 | I1J090_BRADI; Uncharacterized protein | ||||
STRING | Sb06g024200.1 | 1e-175 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4424 | 34 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.3 | 9e-65 | GATA transcription factor 26 |